Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0964 ATGTCTTCAGGCTTTCCCGGCGGTGCACCGGACTTCTACGCCTCCGGTGGAATCGGTGGAAGATCCGTCGCCATGAACAACAACCCTCATGTTCCGTACAGGTCTCAGATGCCCGGAATTCTCGTCGACCCATCTTCTCAGATCGTTCAACGCCGGCCTGATTGGATCGGAAAACGGTCGCTGGCGGAGTTTCAGCCGAGGATGTACCAGCATGCTTCTCCAATATCTCCTCTTTCACCGGTGGACTATTCAGCCTCCATCTCGCCGGAGTTTCCGTCGGTTTCAGCGGGAAGGTATGGATTGCCTCTTCTTCAACAGCTACGACCGCAACCCATCGCGCTTGGTAACAACGTGATGGCTCCTCGGACCGCTAATTTATCGACTGTGACATACCCAAATTTCCCTCACAATAGAGGTGCGTTACAAGAATCAGAGCCGGAATCAGAGAAGAAGATTATGAATCGGCTCCAGGAACTCGAGAAACAGCTGTTAGACGACGACGACGTCGACCAAGAGGGCGATGCTGTGTCTGTCGTCACGCACAGCGAGTGGTCGGAAGCCATACAGAGCCTCATCATCCCAAATCAAAAGCCCATTTCGCCATCATCTTCGTCTTCTTCAACGTCATCGATCGCTTCTGCGGTACCCATCTGCCCCAAGCAATCGGCCCACGAAGCCGCATCTGCCATATCCGAAGGCATGTTGGACGCAGCGATGGAGTCCCTCACGCGCCTGACCCTGGTCGCCAACGCTCGAGGTAATTCAGAGCAACGTTTAGCGGCGTACATGGCGTCGGCGCTCAAATCCCGATTGAGCGCAGCCGAGAATCCGCCTCCAGTGGCGGAGCTCTACAGCAAGGACCATATAATGGCAACCCAAATGCTGTACGATATGTCTCCGTGCTTCAAGCTGGGGTTCATGGCGGCAAACCTTGCAATTCTTGAAACGACGTCGTCGGAGCAGAGCGCCGCCAAGTTTCACGTTCTCGATTTCGACATCGGCCAAGGAGGCCAATACGTAAACTTGGTCCACGCCCTCGGTGCGCGTCAAAACGGGAAGCACACTTCCTTGAAAATCACCACCATCGCAGATCCCAGCAATGGTGGCACCGACGAGAGGTTGAAAGTGGGCGAAGATCTGAGTCAACTCGCGGAACGGCTTTGCATCAGCTTGAAATTCAAGGTCGTGACTCATAAAATCCATGAACTGAGTCGCGAGTCACTGGGCTGCGAGTCCGATGAGGTCCTGGTGGTGAATTTAGCGTTCAAGCTCTACAAAATGCCGGACGAGAGCGTGACGACGGAGAACCCTCGTGACGAGCTTCTCCGGCGGGTGAAGTCTTTGCAGCCGCGGGTGGTGACTGTGGTGGAGCAAGAGATGAATGCAAATACTGCGCCTTTTTTGACCAGGGTGAACGAGGCCTGCGCATACTATGGTGCTTTGCTCGACTCGCTAGACTCGACCGTGTCAAGAGACAGATCGGAAAGAGTCCAAGTCGAGGAGTGTCTGGGTCGCAAACTGGCAAACTCGGTTGCGTGCGAAGGGAGGGACCGCGTGGAAAGATGCGAGGTGTTTGGGAAGTGGCGGGCCCGGATGGGCATGGCCGGGTTCGAGCCCAGGCCCATGAGTCAACACATTGCCGACTCAATGAGATCCCGCGTCAACTCACACCAGCGCGGTAACCCAGGATTCACCGTCAAAGAAGAAACCGGTGGGATCTGCTTTGGATGGAACGGACGAACTCTCACCGTCGCATCTGCTTGGCGTTAA 1770 0.5525 MSSGFPGGAPDFYASGGIGGRSVAMNNNPHVPYRSQMPGILVDPSSQIVQRRPDWIGKRSLAEFQPRMYQHASPISPLSPVDYSASISPEFPSVSAGRYGLPLLQQLRPQPIALGNNVMAPRTANLSTVTYPNFPHNRGALQESEPESEKKIMNRLQELEKQLLDDDDVDQEGDAVSVVTHSEWSEAIQSLIIPNQKPISPSSSSSSTSSIASAVPICPKQSAHEAASAISEGMLDAAMESLTRLTLVANARGNSEQRLAAYMASALKSRLSAAENPPPVAELYSKDHIMATQMLYDMSPCFKLGFMAANLAILETTSSEQSAAKFHVLDFDIGQGGQYVNLVHALGARQNGKHTSLKITTIADPSNGGTDERLKVGEDLSQLAERLCISLKFKVVTHKIHELSRESLGCESDEVLVVNLAFKLYKMPDESVTTENPRDELLRRVKSLQPRVVTVVEQEMNANTAPFLTRVNEACAYYGALLDSLDSTVSRDRSERVQVEECLGRKLANSVACEGRDRVERCEVFGKWRARMGMAGFEPRPMSQHIADSMRSRVNSHQRGNPGFTVKEETGGICFGWNGRTLTVASAWR* 590
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0964 589 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 224 582 IPR005202 -
Vvi16g0964 589 ProSiteProfiles GRAS family profile. 210 589 IPR005202 -
Vvi16g0964 589 Pfam GRAS domain family 225 589 IPR005202 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0964 Vvi-Chr16 17872954 17874798 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0964 26 589 GRAS Transcription Factor Family AT5G52510 49.032 5.55e-172 501
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Vvi16g0964 GRAS 5.4e-109 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0964 - - vvi:100261057 1110.52