Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0957 ATGGCTAGTCGCTACGAGCTAGAGCTGATTATCTCCTCCGCCAAAGACCTGAAGAATGTGAACAGGCGTCACGGCTCTCTGAAGCCATACGTCGTAGTTTGGGTGGATCCTGCGGCCAAGCTCTCCACCAAAGTCGACAACGAAGGCGACACCTCTCCTGGCTGGAACGAGACTCTACTCATTCCGGTCCCCTCCCGGATCGAAGACTCCACACTCTACCTCGACGTCGTCCATTTCAAAGCCGATGACGAAGACGACACCAAGCCGGTCGTCGGCTCCGCTCGCCTCTTCCTCCCCCACGTGGTCGACGAAGTCGGCTTCGGAGCCCAGGCCATCCGCACTCTCGAGCTCCACCGCCCCTCCGGCCACCCTCAGGGAAAGGTGGAAGTTAAGGTCTCCGTGAGAGATCCGCGCTACCGTGCGCCTGAGTCCGCCTACGCCACTCCATGCGTAGATCAAGTTGTGAAGAAGGAGGAAGCTGAGGTTGTGAAGGTGGCTGTCCATGGAAAATCCCACATCATGCCCACTAAGAAGCTAGGAAGAAGAGAGTGTCAATTGGTCACATTTGATCTCCCATATTTGGCCTTTTACTATAACCAAAAACTGTTATTCTACAAGGGGTGTGACTTTGAGGACATGGTGGGTAAATTGAAGGATGGGTTAGGGGTAGTTTTGGAAGAGTTTTATCAGTTGGCTGGGAAGCTAGAGAAGGATGAAGATGGGGTCTTTAAGGTCGTGTATGATGATGAAATGGAGGGTGTAGAAGTGTTGGAAGCAAGTGCTGATCATGTCAGTGTCTCTGATCTAATGGATGTGGAGAGCACAAGCATGATGAAAGATATGCTGCCACACACCCAAGTCTTGAACTTTGAGGGTCTTCATAAACCCCTCCTCGTCCTACAGTTCACCAAGCTAAGAGATGGCCTCGCAATGGGATGCGCGTTCAACCACGCTGTCCTCGACGGTACCTCCACGTGGCACTTCATGAGCTCGTGGGCCGAAATCTGCAGTGGAGCCGACTCCATCTCCGTCCCACCGTTCCTCGACCGCACCAAAGCGCGCAAAACGCGCGTGAAGTTCGACCTCCCCCTCGACCCCACAGCCGCCAATCCAAGCGGCACGTCGGAGCCGCCGCCGCTTCTCCGCGAGCGCATCTTCCGATTCTCGGAATCTCAAATCAACCGGGTCAAGTCAACGCTCAACAAAACCCCATCTGACGGCTCCAGACCCTTCTCCTCCTTCCAATCGCTCTCCACGCACGTGTGGCTCGCGGTGACACGCGCTCGCCAACTCAAACCCGAGGACGTCACCGTCTACACCGTCTTCGCCAACTGCCGCAAGAGGGTCGACCCTCCCATGCCGGAGTCCTACTTCGGCAACCTGATTCAAGCCATCTTCACCGTCACCGCAGCCGGACTCCTCTACGCAAACCCGCCGGAGTTCGCGGCGGCAATGATTCAAAAAGCGATCGTAACGAACGACGCGAAAGCCATCAACGAACGCAACGATAAGTGGGAGAGCAACCCAATAATATTCCAGTTCAAAGACGCCGGAGTGAACTGCGTTACGGTGGGAAGCTCGCCGAGGTTCAAGGTGTACGACGTGGACTTTGGGTTTGGGAAGCCGGAGAGGGTGAGAAGTGGATCGAACAACAAATTTGACGGAATGGTGTATTTGTATCAGGGGAAGACCGGGGGAGGAAGCATTGACGTTGAGATAACGTTGGAGGCTGGTACAATGGAAAGGTTGGAGAAGGATAAGGAGTTTCTAATGGAGGTTTAG 1782 0.5466 MASRYELELIISSAKDLKNVNRRHGSLKPYVVVWVDPAAKLSTKVDNEGDTSPGWNETLLIPVPSRIEDSTLYLDVVHFKADDEDDTKPVVGSARLFLPHVVDEVGFGAQAIRTLELHRPSGHPQGKVEVKVSVRDPRYRAPESAYATPCVDQVVKKEEAEVVKVAVHGKSHIMPTKKLGRRECQLVTFDLPYLAFYYNQKLLFYKGCDFEDMVGKLKDGLGVVLEEFYQLAGKLEKDEDGVFKVVYDDEMEGVEVLEASADHVSVSDLMDVESTSMMKDMLPHTQVLNFEGLHKPLLVLQFTKLRDGLAMGCAFNHAVLDGTSTWHFMSSWAEICSGADSISVPPFLDRTKARKTRVKFDLPLDPTAANPSGTSEPPPLLRERIFRFSESQINRVKSTLNKTPSDGSRPFSSFQSLSTHVWLAVTRARQLKPEDVTVYTVFANCRKRVDPPMPESYFGNLIQAIFTVTAAGLLYANPPEFAAAMIQKAIVTNDAKAINERNDKWESNPIIFQFKDAGVNCVTVGSSPRFKVYDVDFGFGKPERVRSGSNNKFDGMVYLYQGKTGGGSIDVEITLEAGTMERLEKDKEFLMEV* 594
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0957 593 SMART C2_3c 6 121 IPR000008 -
Vvi16g0957 593 Pfam C2 domain 6 96 IPR000008 -
Vvi16g0957 593 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 170 590 - -
Vvi16g0957 593 Gene3D - 162 363 IPR023213 -
Vvi16g0957 593 Gene3D - 365 586 IPR023213 -
Vvi16g0957 593 Gene3D C2 domain 3 139 IPR035892 -
Vvi16g0957 593 FunFam Tryptamine hydroxycinnamoyl transferase 368 587 - -
Vvi16g0957 593 CDD C2_SRC2_like 6 130 IPR044750 GO:0006952
Vvi16g0957 593 ProSiteProfiles C2 domain profile. 1 112 IPR000008 -
Vvi16g0957 593 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 3 136 IPR035892 -
Vvi16g0957 593 Pfam Transferase family 164 589 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0957 Vvi-Chr16 17806355 17808294 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0957 217 593 Monolignol Biosynthesis Gene Families AT5G48930 30.075 2.89e-45 164
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0957 K19747 - vvi:100243942 1181.39