Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0953 ATGCACCTTCCAACCATATCAAATGAAAACTCCCCTATAAGTATATCCCTTAATCCCTCTCTCTTCACTCCCCAAACCTCTACTCTCTCTCCTTTGCTTTTAGGGTTCTTCATCTCATCAACCATGGCAGCTGATCAAGTTGTGAAGAAGGAGGAAGATGAGGTTGTGAAGGTGTCTGTCCATGGAAAGTCCCACATTATGCCCACTAAGAAGCTTGGGAGAAGAGAGTGTCAGTTGATCACATTTGATCTCCCATATTTGGCCTTTTACTATAACCAAAAGCTGCTATTCTACAAGGGGTCTGACTTTGAGGACATGGTGGGTAGATTGAAGGATGGGTTAGGGGTAGTTTTGGAAGAGTTTTATCAGTTGGCTGGGAAGCTTGAGAAGGACGAAGATGGGGTCTTTAAGGTTGTGTATGATGATGAAATGGAGGGTGTGGAAGTGTTGGAAGCAAGTGCTGATCAGATCAGTGTCTCTGATCTAACAGATGTGGAGTGCACAAGCATGATGAAGGATATGGTGCCATACACCCAAGTCTTGAACTTTGAGGGTCTTCATAAACCCCTCCTGGTCCTACAGTTCACCAAGCTAAGAGATGGACTCGCACTGGGATGCGCTTTCAACCACGCGATCCTCGACGGTACCTCCACGTGGCACTTCATGACCTCGTGGGCCGAGATCTGCAACGGAGCCGACTCCGTCTCCGTCCCACCGTTCCTCGAGCGCACCAAAGCGCGCAAAACGCGCGTGAAGCTCGACCTCCCTCTCAACCCCGCAGCCGCCCCTCCGAACGGCACGGCGGGGCCACCGCCGCTTCTCCGTGAGCGTATCTTCCGATTCTCGGAATCTCAAATCAACCAGATCAAGTCCACGCTCAACAAAACCCCATCCGACGGCTCCAAACCCTTCTCCACCTTCCAATCGCTCTCCACGCACGTGTGGCTGGCGGTGACACGCGCTCGCCAACTCAAACCCGAGGACGTCACTGTCTACACCGTCTTCGCCGACTGCCGCAAGAGGGTCGACCCTCCCATGCCGGAGTCCTACTTCGGCAACCTGATTCAAGCCATTTTCACCGTCACCGCCGCCGGACTCCTCTACGCAAACCCGCCGGAGTTCGCCGCGGCGATGATTCAAAAAGCGATAGTAACGCACGACGCGAAAGTCATCAACAAACGCAACGATGATTGGGAGAGCAACCCAATAATATTCCAGTTCAAAGACGCCGGAGTGAACTGCGTTGCGGTGGGAAGCTCGCCGAGGTTCAAGGTGTACGACGTGGACTTTGGGTTTGGGAAGCCGGAGAGGGTGCGAAGTGGATCGAACAACAGATTTGACGGAATGGTGTATCTGTATCAGGGGAAGACCGGGGTAGGAAGCATTGACATGGAGATATCGTTGGAGGCTGGTGCAATGGAGAAGTTGGAGAAGGATAAGGAGTTTCTAATGGAGGTTTAG 1461 0.5236 MHLPTISNENSPISISLNPSLFTPQTSTLSPLLLGFFISSTMAADQVVKKEEDEVVKVSVHGKSHIMPTKKLGRRECQLITFDLPYLAFYYNQKLLFYKGSDFEDMVGRLKDGLGVVLEEFYQLAGKLEKDEDGVFKVVYDDEMEGVEVLEASADQISVSDLTDVECTSMMKDMVPYTQVLNFEGLHKPLLVLQFTKLRDGLALGCAFNHAILDGTSTWHFMTSWAEICNGADSVSVPPFLERTKARKTRVKLDLPLNPAAAPPNGTAGPPPLLRERIFRFSESQINQIKSTLNKTPSDGSKPFSTFQSLSTHVWLAVTRARQLKPEDVTVYTVFADCRKRVDPPMPESYFGNLIQAIFTVTAAGLLYANPPEFAAAMIQKAIVTHDAKVINKRNDDWESNPIIFQFKDAGVNCVAVGSSPRFKVYDVDFGFGKPERVRSGSNNRFDGMVYLYQGKTGVGSIDMEISLEAGAMEKLEKDKEFLMEV* 487
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0953 486 FunFam Tryptamine hydroxycinnamoyl transferase 261 480 - -
Vvi16g0953 486 Pfam Transferase family 57 482 - -
Vvi16g0953 486 Gene3D - 55 255 IPR023213 -
Vvi16g0953 486 PANTHER FAMILY REGULATORY PROTEIN, PUTATIVE (AFU_ORTHOLOGUE AFUA_3G14730)-RELATED 63 483 - -
Vvi16g0953 486 Gene3D - 258 479 IPR023213 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0953 Vvi-Chr16 17776100 17779099 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0953 90 486 Monolignol Biosynthesis Gene Families AT5G48930 29.147 1.48e-44 160
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0953 K19747 - vvi:100249245 861.677