Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0947 ATGCCTTCATGGTGGGGAAAATCATCATCCAAAGAAGCAAAGAAGAAAACAAACAAGGAAAGTTTCATCGACACATTACATCGAAAATTTAAGATTCCATCTGAAGGTAAGGTGAGCAATAGATCAGGAGGGTCTCATAGACGGTGCAGTGATACAATATCAGAGAAGGGATCTCAATCCCGAGCAGAATCAAGATCACCATCACCTTCCAAACTAGTGTCAAGATGTCAAAGTTTTGTTGAAAGGCCTAATGCCCAACCACTTCCACTTCCTGGTCGGCACCCTGCAAGTGTGGGTCGTACTGATTCTGGAATCAGTATATCAACAAAACAAAGACTGGAAAAAGGCTCCAAGTCATCCTTTCTTCCTCTCCCAAGACCCAGATGCATTGGGGGCAGACCCGATCCTACAGATTTAGATGGTGATTTTGTTGCTTCAGTTTATAGCGAAGGTTCCACTGATAGTGAAGATGCAGCTGACTCACATCATCGTAGTCCCCAGGCAACTGACTATGATAATGGGACTAGAACTGCTGCAAGCATATTTTCTAGTGTAATGCTCAAGGATCAGTCACCTGTTGCTCATGTAAACGCAAGGGAGGCACAAAAACCAGCTAATCTTTTGTTTAGTAATCATATTTCCCCTACATCACCTAAACGGAGGCCTTTAAGCAGCCATGTACCAAATTTACAGGTCCCTTATCATGGTGCTTTCGGCAGTGCTCCAGACAGCTCAATGTCAAGTCCTTCAAGAAGTCCATTGAGAGCATTTGGCACTGACCAAGGTTTGAACTCTGCTTTCTGGGCTGGGAAACCTTATTCAGATGTTACTTTACTTGGATCTGGCCAATGCTCCAGTCCAGGTTCAGGTCAGAATTCTGGGCACAATTCAATGGGAGGAGATATGTCAGGACAGTTGTTTTGGCAACCCAGCAGGGGCAGCCCGGAGTATTCTCCTATACCTAGTCCCAGAATGACAAGCCCTGGTCCCAGCTCCAGAATTCATAGTGGTGCAGTCACACCTCTTCATCCCAGAGCTGGAGGAGCAGCCTCTGAATCCCAGACAAGCTGGCCAGATGAGGGGAAACAACAAAGCCACCGGTTGCCCCTTCCTCCTGTAGCAGTTTCTTCTTCTTCACCTTTCTCTCATTCAAATTCACCAGCAGCATCTCCCTCTGTCCCACGCAGTCCAGGAAGAGCAGAGGCTCCAACAAGCCCAGGCTCTCGCTGGAAAAAGGGAAAGTTGCTGGGAAGAGGCACATTTGGACATGTTTATGTTGGCTTTAACAGTGAAAGTGGTGAAATGTGTGCAATGAAGGAGGTGACACTATTTTCAGATGATGCAAAGTCAAAGGAAAGTGCAAAACAGTTGGGGCAAGAAATTGTTCTGCTTAGCCGCTTATGCCATCCAAACATTGTGCAGTATTATGGATCTGAAACGGTTGGTGACAAACTTTATATATACTTGGAGTATGTATCTGGTGGCTCCATCTATAAACTTCTTCAAGAATATGGCCAACTTGGTGAACTAGCAATTCGTAGCTATACCCAACAAATCTTGTCAGGGCTCGCCTATTTGCATGCTAAAAATACTGTCCATAGGGATATTAAAGGGGCAAATATACTTGTAGACCCAAGTGGTCGAGTCAAGTTAGCAGATTTTGGAATGGCAAAGCATATCACTGGGCAGTCATGTCCTTTATCATTCAAGGGAAGCCCATACTGGATGGCACCTGAGTTGTTCGCTCAGGTTATAAGGAATTCAAATGGTTGCAACCTTGCTGTGGATATTTGGAGTCTAGGGTGCACAGTTTTGGAAATGGCCACAACAAAACCACCCTGGAGTCAGTTTGAAGGGGTTGCTGCAATGTTCAAGATTGGGAATAGTAAGGACCTCCCAGCAATTCCTGATCACCTTTCAGATGAAGGTAAGGATTTTGTAAGGCAGTGCTTGCAACGAAATCCACTACATCGTCCAACAGCTGCTCAGCTCTTGGAGCATCCTTTCGTGAAAAATGCTGCACCTCTGGAAAGACCTATTTTGTCCCCTGAAACTTCAGATCCACCTCCTGGAGTTACCAATGGAGTGAAATCTCTGGGAATCGGACATGCTAAAAATCTTTCATCCTTGGATTCAGAAAGACTTGCAGTTCATTCGTTTAGAGTTTTAAAAACTGGTTCCCATTCAAGTGATCCTCATATTGCGAGGAATATATCATGTCCTGTCTCTCCTATTGGGAGCCCTCTTTTGCATTCAAGGTCACCTCAACACCTGAATGGAAGAATGTCTCCTTCTCCTATATCCAGTCCTCGTACCACTTCTGGCCCATCCACGCCTTTGACAGGTGGCAGTGGTGCCATTCCATTTCCTCATCTAAAACCATCAGTTTACCTGCAAGAGGGATTTGGAAACGTTTCTAAGCCCCTAAACAATCCCTATTCCAACGGCCCCTCCTATCATGATCCAAATGCCGACATCTTTCGAGGGATGCAGCTAGGGTCTCACATATTCCCAGAAAGTGATGCTCTTGGAAAGCAGTTTGGGAGGACTGCTCATGTAGAATTGTATGATGGGCAGTCAGTCTTAGCTGATCGCGTCTCTCGGCAGCTCTTAAGGGATCAAGTGAAGATGAATCCATCTCTGGATCTTAGTCCCTCCTCTATGTTGCCCAGCCGGAACACTGGAATCTAA 2691 0.456 MPSWWGKSSSKEAKKKTNKESFIDTLHRKFKIPSEGKVSNRSGGSHRRCSDTISEKGSQSRAESRSPSPSKLVSRCQSFVERPNAQPLPLPGRHPASVGRTDSGISISTKQRLEKGSKSSFLPLPRPRCIGGRPDPTDLDGDFVASVYSEGSTDSEDAADSHHRSPQATDYDNGTRTAASIFSSVMLKDQSPVAHVNAREAQKPANLLFSNHISPTSPKRRPLSSHVPNLQVPYHGAFGSAPDSSMSSPSRSPLRAFGTDQGLNSAFWAGKPYSDVTLLGSGQCSSPGSGQNSGHNSMGGDMSGQLFWQPSRGSPEYSPIPSPRMTSPGPSSRIHSGAVTPLHPRAGGAASESQTSWPDEGKQQSHRLPLPPVAVSSSSPFSHSNSPAASPSVPRSPGRAEAPTSPGSRWKKGKLLGRGTFGHVYVGFNSESGEMCAMKEVTLFSDDAKSKESAKQLGQEIVLLSRLCHPNIVQYYGSETVGDKLYIYLEYVSGGSIYKLLQEYGQLGELAIRSYTQQILSGLAYLHAKNTVHRDIKGANILVDPSGRVKLADFGMAKHITGQSCPLSFKGSPYWMAPELFAQVIRNSNGCNLAVDIWSLGCTVLEMATTKPPWSQFEGVAAMFKIGNSKDLPAIPDHLSDEGKDFVRQCLQRNPLHRPTAAQLLEHPFVKNAAPLERPILSPETSDPPPGVTNGVKSLGIGHAKNLSSLDSERLAVHSFRVLKTGSHSSDPHIARNISCPVSPIGSPLLHSRSPQHLNGRMSPSPISSPRTTSGPSTPLTGGSGAIPFPHLKPSVYLQEGFGNVSKPLNNPYSNGPSYHDPNADIFRGMQLGSHIFPESDALGKQFGRTAHVELYDGQSVLADRVSRQLLRDQVKMNPSLDLSPSSMLPSRNTGI* 897
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0947 896 MobiDBLite consensus disorder prediction 278 414 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 155 169 - -
Vvi16g0947 896 Pfam Protein kinase domain 411 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0947 896 MobiDBLite consensus disorder prediction 1 174 - -
Vvi16g0947 896 CDD STKc_MEKK1_plant 409 670 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 746 786 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 241 259 - -
Vvi16g0947 896 Gene3D Transferase(Phosphotransferase) domain 1 408 686 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 877 896 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 278 312 - -
Vvi16g0947 896 ProSiteProfiles Protein kinase domain profile. 410 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0947 896 MobiDBLite consensus disorder prediction 55 81 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 370 392 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 101 116 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 749 781 - -
Vvi16g0947 896 PANTHER MAP KINASE KINASE KINASE SSK2-RELATED-RELATED 63 683 - -
Vvi16g0947 896 FunFam Mitogen-activated protein kinase kinase kinase 408 694 - -
Vvi16g0947 896 SMART serkin_6 410 670 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0947 896 MobiDBLite consensus disorder prediction 879 896 - -
Vvi16g0947 896 ProSitePatterns Protein kinases ATP-binding region signature. 416 439 IPR017441 GO:0005524
Vvi16g0947 896 MobiDBLite consensus disorder prediction 9 54 - -
Vvi16g0947 896 MobiDBLite consensus disorder prediction 239 259 - -
Vvi16g0947 896 SUPERFAMILY Protein kinase-like (PK-like) 408 758 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0947 Vvi-Chr16 17708281 17713634 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0947 1 885 MAP Kinase Kinase Kinase AT1G63700 60.918 0.0 927
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE11 Vvi16g0947 Pkinase 9.2e-68 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0947 K20717 - vvi:100242348 1702.18