Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0940 ATGCAGAAGTGTGAGAAGTGTTCCAAAGAATTTTGTTCACCCATTAATTACCGAAGACATATACGTGTACACCGTCGGACTTTGAACATTGATAAGGATTCAACTAAAAACAGGAATCTATTAGGAGCATTTTGGGATAAGCTCTCTGTGGATGAGGCTAAGGAAGTTGTATCATTCAAGAATGTTTCACTCGAGGAAGTTTCTGGGTCTTCAATTGTGAGGGCATTGACATCATTTGTCCGGAAGCCAGGATTTTCTTCTCTTCCACAAGTATATATGAAGGCTGGTTCTGCCCTTTTGGATATTGTCCAATCTAGACCTTCCAGGTTCCCAATATCCTCCCAGGATTTATTCAGTATCCTTGATGATGCAAGTGAAAAAACATTTTTATGTGCTGGCACAGCTGAATCAATGCAAAAATATGTTTTTGATGGGGAAGCTGGGAAGATTGGTTTGGAGATGAAAAACTTAGTTGCTTGCACCTGCTTCCTGGTAGAACAGAAACTGGTTAAGGCATGGCTTGCTGACAAGGATGCTGAAGCTTTGAGGTGCCACAAGTTGCTTGTGGAAGAGGAAGAAGCTGCTCAGAAAAGGCAAGCCGAGCTGTTGGAGAGGAGAAGGCAGAAAAAGCTTAGGCAGAAAGAACAGAAAGCAAAGGAGCAGACCAATGGGGAGAAGACAGACTCTAAGGAGGACATCACCAACATGTCAGAGGTTGTGCCTACTGCAGAAATTTCCAGTCATGTGGCTACAACCGTTTGTGAGACAGCCACACAATCAGATGCCATTTCTCCATCAGTTGAACCCATAGAACTTTCAAACACTGAAAAAGATAGTGCAAATACCACAGCTCAATCTGGAATTGGTGCTGGATATTCTGAAGCAGGCACTTCTCAGAATGTTGAACGCCGAGTTGCATACGGAGTTGGTTGTCGGCATTTAATTAAAATGCGAAGACAGGTGCCAAAATCACAGAGAGGCGCACCAAATGGCTTCCATGCAGATCAGAATCCTCAGATATCAAAGTTTGGAGCCATACAAAAGCATGCCACCCACAGGGATCCCAGGGCTGTTCCAGTAGTCAACAACAATAAAGTTTGGACCCGTAAACCTAAATCAGAAAATGAAGGGGAAAGCTTGAAAAGCAGATTACAGAGAGAGGTACTAAACCAACCAGATCAAAATATGAACTGTGAGGTGATGATAGGTTCTATCTCTGTCACACTTGGAAATTCTAGTGATCAGCTACAAGGTGAGAATCTAGTTGTAGCCCGAGATAGTTGCACCTCACAGCATCCAATGCCAAAGAAAACCTATATTCAGGAGAAGCCCATTAAACCAGATTCTGTTTCTATGAAGCCAGATCCAGCTCAGAGTGGCACAAATAGGTCAACAGTTAAACTTTGGAGGCCTGTGAACCGACAGGAAACTGGAGGTTCAATGCCAGTTCAAAGTGGCAATAGAGAATCTGAAGCTGGTGTGGCTACTGAGAAGGGAAATGACCTAACCCTGTCCGATGAAAGCTGCATCAGATCATGTGCTATGGACATTAATAGTAGCACAGGTGTGAACAATTTCGCTTCACAGATGAAGGAAAGACCATCTGTAGGAGGTTTTCAGTTCTCCAGCTGTGCTGCAGAAGCTTTTCTCGCACAGAGATGGAAGGAGGCTATTGCTTCAGACCATGTGAAACTGGTCATATTTCCAGAATCCGAGCCTCCAGGATGCACAGAACCAGCATCAGACAATCTTGTCAAGACACAGAACAACCTTGCTAATGCCGGGGCTCTCGAGTCTTCAACCTCGGCAACTGTCAAAGTCAAGTTCAGACCAATGTCCGAAAAGGGAATTAAGCTAAAGTACATTCCAAAAAAGAGAACCAATACCTGA 1890 0.4386 MQKCEKCSKEFCSPINYRRHIRVHRRTLNIDKDSTKNRNLLGAFWDKLSVDEAKEVVSFKNVSLEEVSGSSIVRALTSFVRKPGFSSLPQVYMKAGSALLDIVQSRPSRFPISSQDLFSILDDASEKTFLCAGTAESMQKYVFDGEAGKIGLEMKNLVACTCFLVEQKLVKAWLADKDAEALRCHKLLVEEEEAAQKRQAELLERRRQKKLRQKEQKAKEQTNGEKTDSKEDITNMSEVVPTAEISSHVATTVCETATQSDAISPSVEPIELSNTEKDSANTTAQSGIGAGYSEAGTSQNVERRVAYGVGCRHLIKMRRQVPKSQRGAPNGFHADQNPQISKFGAIQKHATHRDPRAVPVVNNNKVWTRKPKSENEGESLKSRLQREVLNQPDQNMNCEVMIGSISVTLGNSSDQLQGENLVVARDSCTSQHPMPKKTYIQEKPIKPDSVSMKPDPAQSGTNRSTVKLWRPVNRQETGGSMPVQSGNRESEAGVATEKGNDLTLSDESCIRSCAMDINSSTGVNNFASQMKERPSVGGFQFSSCAAEAFLAQRWKEAIASDHVKLVIFPESEPPGCTEPASDNLVKTQNNLANAGALESSTSATVKVKFRPMSEKGIKLKYIPKKRTNT* 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0940 629 MobiDBLite consensus disorder prediction 473 499 - -
Vvi16g0940 629 PANTHER C2H2-LIKE ZINC FINGER PROTEIN 1 628 - -
Vvi16g0940 629 Coils Coil 200 220 - -
Vvi16g0940 629 ProSiteProfiles Zinc finger C2H2 type domain profile. 2 24 IPR013087 -
Vvi16g0940 629 ProSitePatterns Zinc finger C2H2 type domain signature. 4 24 IPR013087 -
Vvi16g0940 629 SMART c2h2final6 2 24 IPR013087 -
Vvi16g0940 629 MobiDBLite consensus disorder prediction 473 491 - -
Vvi16g0940 629 MobiDBLite consensus disorder prediction 206 233 - -
Vvi16g0940 629 MobiDBLite consensus disorder prediction 444 463 - -
Vvi16g0940 629 MobiDBLite consensus disorder prediction 206 234 - -
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0940 1 626 C2H2 Transcription Factor Family AT4G25610 42.138 3.70e-130 393
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vvi16g0940 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0940 - - vvi:100262848 1222.61