Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0939 ATGGAGAGTTGTGCAGAGATCGAGAATGGGCCAGTCGGTGATGTGGAAAACACGATTTTTGTGGCGGTTGGTAAGAGGGTGGAGAAGAGCAAAACGGCTCTGTTTTGGGCTGTGAAGAACTTTTCAGGGAAGAGAGTATGTGTACTTCATGTTCATCAACCTGAGAATACATACGCGTCCGTGAACAAAAAGGTTTCAGCTAACAAATTGAAACAACAAGCAGTCAAGGCTTCCTACGAACGTGAAAGGCAAAATATGATGAAACTTCTCAATCAATACCTCCTTATTCTTGCCCAAAAGGGGGTGCGGGCTTATAAACTGTGGATTGAAATGGAAAATATTGAGAAAGGGATTGTAGAAATCATTGCTCAGAAGAATATAAAATGGCTTGTTATGGGAGCTGCAGCAGATAAATATTATTCAAAGAAAATGGCTGAGCTCAAGTCCAAGAAAGCGATCTTTGTATGCCAACAAGCACCACTTTCCTGTCATATTTGGTTTGCTTGCAAGGGTTACCTCATTTACACAAGGGGAAGTAGACAGGTTGAAACTGAAATAGAGGTTTCTCCTCCTTTGCTGCTACTGAATAAAAATGTGGAGAGCAAGCAATCTGCGAACCTGATATCAGAATCTATTACATATAAGCAGAAATCCTTTGATTTGTCCTCCCTGAAGAGTACCGGAAGAATGATGTTACTACAGTACCATGCAAATACAGAAGAAAATGCTGATGAATGGGATGGAATGTCAAGAAGGTCCAGTTCTCCACGCCTATCGAGTTCAAATTGGTCAAACAAAGGAGAGGTTGACAGTTTACACTCTACCCTCTGTCCGAAGGATGAAGCACAAGAGGAAGATTCAATTTTACCCTCAGTACAAAAAGCCCATGATGGTCATCATTATTCACCATCTATTATTTTTCTGGACGAAAAAAATCAAGGACTGGCAACTGACGGAAGTTATGATAGACTAGAACCAGCCATTATGTTTACTAAAAACTCAAAGCAGGATGCATTTGAAGAGTCAGTTAAGCGATGGCAAGCAGAAGATGATGCCATGGAGGCCATACGCAAGGCCAAAGAAACTGAAACATTACACACCAAGCATATGAGCAAAAGGAAAGAACTGGAGGAAGAGCTAGCAAGAGGAAAGGAAGAAGTAGAAAGGATGAAGAATCAACAGGATGAACTCATGAAAGAACTCCAGATGGTCCAGGACCAGAGATCAATACTGGAGAGCCGAATTGCAGAATCACATTCATCAGAGAAGGAGTTGGAGGAGAAGATCATCTCAGCTGTGAAACTCTTGATAAGTATAAGGCAGAAACGGGATGAACTGCTAGTAGAGCACAAAGATGCAATTAGAGAAGTCAATGAACTAAGAGGATCAGTACAAGAGGAGGCTGCAAGCTTTTGCACACCACAGTTCTTGTCTTTCTCTTTCATGGAGATCAATGAAGCAACCAACAATTTTGATCCATCATGGAAGATTGGAGAAGGAAGTTATGGAAGTGTCTATAAAGGGGTTCTTCGCCACATGCATGTAGCTATAAAAATGCTGCCTTTTTATGGCTCTCAAGACCACTTGGAGTTCCAGCATGAGGTGGAGGTTTCGTGTAGGGTGAGGCATCCAAATCTCATGACCCTCATTGGAACATGTCCAGAATCTAGGTCACTTATTTATGAGTACCTCCAAAATGGAAGCCTTGAAGACCGGCTCACCTGCAGGAACAGAACTCCCCCTCTTCCATGGCAAACTCGAATACGCATTGCCACAGAGATATGTTCTGCCCTTATCTTCCTTCACTCCAACAAGCCTTCAATCATCCATGGAAATCTGAAGCCTACCAAGGTGCTCCTTGATGGAAATTATGTTTGCAAGCTCGGTGACTTGGACATCTTGCGCATAATCCCTCCAGGTGAAAATATGACTAAAACCAGCCCAAAGAGTACCTCTGCTTATATGGACCCAGAATTTCTTGAGACTGGAGAACTTGCTCCAGAGTTGGATGTATACTCATTTGGAATTATAATGATGCGGCTTTTAACTGGGAGACCAGCGTTGGGAATAGTGAACGATGTCAAATGTGCACTAGAGAATGAAGTTTTTAATGCAGTTTTAGACTTTTCAGCTGGGGACTGGCCACTTGAGCAAGCAAATCAGCTGGCTCACTTGGCATTGAGATGCTGCGAGAAAAATCACTTCAATCGGCCTGATCTTGCATCCGAAGTATGGAGTGTTCTTGAGGCAATGATGGTTTCATGTACCGCCTCAGCAACATGCTTGGGATCCCGACCCCATCGCCGAATTCCTTCTCATTTCATTTGTCCCATTTTCCAGGAAGTCATGAAAGATCCACATATAGCAGCAGATGGGTTCACATATGAGGCAGATGCAATCAAAGGATGGCTGCAAAGTGGCCACAACACTTCACCAATGACCAATCTTAAGCTATCAGACTGCAATTTACTGCCCAATTATGCCCTACTTTATGCTATTCAGGAGTGGCAGCAACGATCATGA 2523 0.4296 MESCAEIENGPVGDVENTIFVAVGKRVEKSKTALFWAVKNFSGKRVCVLHVHQPENTYASVNKKVSANKLKQQAVKASYERERQNMMKLLNQYLLILAQKGVRAYKLWIEMENIEKGIVEIIAQKNIKWLVMGAAADKYYSKKMAELKSKKAIFVCQQAPLSCHIWFACKGYLIYTRGSRQVETEIEVSPPLLLLNKNVESKQSANLISESITYKQKSFDLSSLKSTGRMMLLQYHANTEENADEWDGMSRRSSSPRLSSSNWSNKGEVDSLHSTLCPKDEAQEEDSILPSVQKAHDGHHYSPSIIFLDEKNQGLATDGSYDRLEPAIMFTKNSKQDAFEESVKRWQAEDDAMEAIRKAKETETLHTKHMSKRKELEEELARGKEEVERMKNQQDELMKELQMVQDQRSILESRIAESHSSEKELEEKIISAVKLLISIRQKRDELLVEHKDAIREVNELRGSVQEEAASFCTPQFLSFSFMEINEATNNFDPSWKIGEGSYGSVYKGVLRHMHVAIKMLPFYGSQDHLEFQHEVEVSCRVRHPNLMTLIGTCPESRSLIYEYLQNGSLEDRLTCRNRTPPLPWQTRIRIATEICSALIFLHSNKPSIIHGNLKPTKVLLDGNYVCKLGDLDILRIIPPGENMTKTSPKSTSAYMDPEFLETGELAPELDVYSFGIIMMRLLTGRPALGIVNDVKCALENEVFNAVLDFSAGDWPLEQANQLAHLALRCCEKNHFNRPDLASEVWSVLEAMMVSCTASATCLGSRPHRRIPSHFICPIFQEVMKDPHIAADGFTYEADAIKGWLQSGHNTSPMTNLKLSDCNLLPNYALLYAIQEWQQRS* 841
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0939 840 MobiDBLite consensus disorder prediction 243 272 - -
Vvi16g0939 840 SMART Ubox_2 773 836 IPR003613 GO:0004842|GO:0016567
Vvi16g0939 840 PANTHER OS02G0152300 PROTEIN 19 835 - -
Vvi16g0939 840 Pfam Universal stress protein family 18 134 IPR006016 -
Vvi16g0939 840 Coils Coil 359 414 - -
Vvi16g0939 840 ProSiteProfiles U-box domain profile. 769 840 IPR003613 GO:0004842|GO:0016567
Vvi16g0939 840 CDD STK_N 18 171 - -
Vvi16g0939 840 ProSitePatterns Protein kinases ATP-binding region signature. 497 518 IPR017441 GO:0005524
Vvi16g0939 840 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 18 134 - -
Vvi16g0939 840 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 769 840 IPR013083 -
Vvi16g0939 840 Pfam U-box domain 770 838 IPR003613 GO:0004842|GO:0016567
Vvi16g0939 840 Pfam Protein kinase domain 496 739 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0939 840 ProSiteProfiles Protein kinase domain profile. 491 752 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0939 840 CDD RING-Ubox_WDSUB1-like 771 826 - -
Vvi16g0939 840 Gene3D Transferase(Phosphotransferase) domain 1 564 762 - -
Vvi16g0939 840 Gene3D Phosphorylase Kinase; domain 1 462 563 - -
Vvi16g0939 840 SUPERFAMILY Protein kinase-like (PK-like) 471 752 IPR011009 -
Vvi16g0939 840 MobiDBLite consensus disorder prediction 252 271 - -
Vvi16g0939 840 Gene3D HUPs 12 135 IPR014729 -
Vvi16g0939 840 SUPERFAMILY RING/U-box 766 839 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0939 Vvi-Chr16 17636824 17646210 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0939 15 838 U-box Gene Family AT2G45910 46.595 0.0 727
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vvi16g0939 PK_Tyr_Ser-Thr 3.7e-35 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0939 - - vvi:100267999 1660.58