Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0931 ATGGCTCCAAAGCAGCCTAATACTGGCCTCTTTGTAGGGTTGAACAAAGGTCATATTGTAACCAAGAAAGAATTACCTCCACGCCCATCGGATAGGAAAGGAAAAACCAGCAAGAGGGTCCATTTCGTAAGGAACTTGATCAGGGAAGTTGCTGGTTTTGCACCATATGAGAAGAGAATCACTGAGCTTCTCAAAGTTGGGAAGGATAAGCGTGCACTGAAAGTTGCAAAGAGAAAGCTGGGTACTCACAAGAGGGCAAAGAAGAAGCGTGAGGAGATGTCTAGTGTTCTCCGCAAGATGAGGTCTGGTGGAGTTGGGGAGAAGAAGAAGTGA 333 0.4625 MAPKQPNTGLFVGLNKGHIVTKKELPPRPSDRKGKTSKRVHFVRNLIREVAGFAPYEKRITELLKVGKDKRALKVAKRKLGTHKRAKKKREEMSSVLRKMRSGGVGEKKK* 111
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0931 110 MobiDBLite consensus disorder prediction 79 110 - -
Vvi16g0931 110 PANTHER 60S RIBOSOMAL PROTEIN L36 1 104 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vvi16g0931 110 MobiDBLite consensus disorder prediction 1 38 - -
Vvi16g0931 110 ProSitePatterns Ribosomal protein L36e signature. 55 65 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vvi16g0931 110 MobiDBLite consensus disorder prediction 87 110 - -
Vvi16g0931 110 Pfam Ribosomal protein L36e 8 101 IPR000509 GO:0003735|GO:0005840|GO:0006412
Vvi16g0931 110 FunFam 60S ribosomal protein L36 1 106 - -
Vvi16g0931 110 Gene3D 60S ribosomal protein L36 1 106 IPR038097 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0931 Vvi-Chr16 17577465 17578280 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0931 8 110 Cytoplasmic Ribosomal Protein Gene Family AT5G02450 86.667 6.63e-59 175
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0931 K02920 - vvi:100262717 219.935