Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0894 ATGGTGAGCCAAAGGCAAAGGCTTGCTCGCCAAATCTACAAAAAGGCGCACCCGGAACTGTTCCCAAAAGCCGAGCCAGCAGCCCCCAAAGACCCAACCAAGAAGAAGAAAAAGAAGAGCAAGTTGAAGCCCAAGAGAGCAGAGATGAAAGGACCCAAGTCCACAGAGAAATCAGATAAATCAAAGCTTAGAAAACACCCACTTAGAGTTCCAGGCATGAAACCTGGCGAGAGCTGTTTCATCTGCAAAGCTAAAGACCATATCGCCAAACATTGCCCCGAGAAAGCTCAGTGGGAAAGGCACAAGATATGTTTGCTTTGTCGACAACGTGGACACAGTCTCAAGAACTGCCCTGATAAGGGTGAGGAAAAGTTGGATAAAAAATTGTGTTATAACTGTGGGGAAACAGGGCACTCACTTGCTAATTGCCCCCAACCTCTTCAAGAAGGGGGAACGAAATTTGCCAGTTGCTTTATTTGTAATGAGCGTGGACATTTGAGTAAGAACTGCCCCAAAAATTCTCATGGGATCTATCCAAAGGGCGGTTGTTGTAAAATATGTGGTGGGGTTACACATTTGGCCAAAGATTGTCCTAACAAAGGCTGCAACAACAGTCCAGTTGCTGCAATTGCTGGAGGTATTAAACATGAAGAGAGGCCAAAGGTAACCAAGTTTGTGAGTGGAGACGATCTTGATGATGACTTTATGGTAGCTGACACATATACTGGCTATAAAGAGAAGTCTTCTGAGGCAAAAGTTCATCCAACTCCTGAGTCGAAAAACAGTCATGTAAAACCAAAAAAGAAGCAAGGTCCTAACGTTGTGAATTTTGTAGGATGA 840 0.444 MVSQRQRLARQIYKKAHPELFPKAEPAAPKDPTKKKKKKSKLKPKRAEMKGPKSTEKSDKSKLRKHPLRVPGMKPGESCFICKAKDHIAKHCPEKAQWERHKICLLCRQRGHSLKNCPDKGEEKLDKKLCYNCGETGHSLANCPQPLQEGGTKFASCFICNERGHLSKNCPKNSHGIYPKGGCCKICGGVTHLAKDCPNKGCNNSPVAAIAGGIKHEERPKVTKFVSGDDLDDDFMVADTYTGYKEKSSEAKVHPTPESKNSHVKPKKKQGPNVVNFVG* 280
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0894 279 ProSiteProfiles Zinc finger CCHC-type profile. 157 172 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 Pfam Zinc knuckle 183 198 IPR025836 -
Vvi16g0894 279 Pfam Zinc knuckle 102 118 IPR025836 -
Vvi16g0894 279 Gene3D - 72 123 - -
Vvi16g0894 279 Gene3D - 124 152 - -
Vvi16g0894 279 Pfam Zinc knuckle 129 145 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 Pfam Zinc knuckle 157 172 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 SUPERFAMILY Retrovirus zinc finger-like domains 124 173 IPR036875 GO:0003676|GO:0008270
Vvi16g0894 279 Gene3D - 153 202 - -
Vvi16g0894 279 ProSiteProfiles Zinc finger CCHC-type profile. 130 145 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 SMART c2hcfinal6 103 119 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 SMART c2hcfinal6 156 172 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 SMART c2hcfinal6 183 199 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 SMART c2hcfinal6 129 145 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 SMART c2hcfinal6 78 94 IPR001878 GO:0003676|GO:0008270
Vvi16g0894 279 MobiDBLite consensus disorder prediction 245 279 - -
Vvi16g0894 279 PANTHER OS04G0555800 PROTEIN 1 278 - -
Vvi16g0894 279 MobiDBLite consensus disorder prediction 1 70 - -
Vvi16g0894 279 MobiDBLite consensus disorder prediction 47 66 - -
Vvi16g0894 279 FunFam Zinc finger CCHC-type-containing 9 154 207 - -
Vvi16g0894 279 MobiDBLite consensus disorder prediction 245 265 - -
Vvi16g0894 279 SUPERFAMILY Retrovirus zinc finger-like domains 72 120 IPR036875 GO:0003676|GO:0008270
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0894 104 205 C2H2 Transcription Factor Family AT5G20220 30.252 6.59e-07 48.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0894 - K05765 vvi:100242054 561.222