Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0878 ATGGGAAGAAAACCTTGCTGCGATAAGCATGGAGTGAAGAGAGGAGCTTGGACTCCCGAGGAAGATGAGATCTTGATTGATTACATAAAAAAAAACGGTCATGGAAGATGGCGGTCTCTCCCCAAGCACGCAGGTCTGCTTCGATGTGGAAAGAGCTGTCGGCTGCGGTGGACGAACTATCTTCGCCCAGACATTAAGCGGGGGCCCTTTACTCCGGAAGAAGAGACTGCCATCATCCAGCTCCACAGCATGCTGGGTAACAGGTGGGCTGCAATCGCTTCAAAAATACCTGGTAGAACGGACAATGAGATCAAGAACTTCTGGAACACCCATCTAAAGAAGCGCCTCCTGGGCAACCACCAAAACCAGCAGACCCAGTGGTCCTCTGTTTTGGAGCCAAGCAATGCGCAATCCAAGTCCCCTTCAACCCGGCACATGGCTCAGTGGGAGAGCGCTAGGGTTGAGGCAGAAGCTCGGCTGTCAATGGAATCGTTACTACTGAGGCCAGCATCAATGAGTAAAAATGACTCTGATTACTTCCTCAGGATATGGAATTCTGAAGTTGGAGACTCATTCAGAAAGAAGAATGGACAATATGGAGTAGCATGTCAAAGCCCCATTTCCTCACTGTCCACAAAATTCAGGTCAGGTTCAAGCCTCACAATGCAGAGAGGACCAGCAGGGACCAGCACATCTACATCAACTACCATAACCAGTAAACAAAAAAACATGGAGCCCAAGAGCCACACTGCATATGCACAAGACATGATGACCGGTTCAGACGACTCAAGCTCTTATGAATTGGGTTATTCTTCAGACATCTCATTCAGACTGCTGCTAGATTTTCAAGGGGACAACGACATGGGATTCCTACAAGGACTTGCTGGATGA 891 0.4871 MGRKPCCDKHGVKRGAWTPEEDEILIDYIKKNGHGRWRSLPKHAGLLRCGKSCRLRWTNYLRPDIKRGPFTPEEETAIIQLHSMLGNRWAAIASKIPGRTDNEIKNFWNTHLKKRLLGNHQNQQTQWSSVLEPSNAQSKSPSTRHMAQWESARVEAEARLSMESLLLRPASMSKNDSDYFLRIWNSEVGDSFRKKNGQYGVACQSPISSLSTKFRSGSSLTMQRGPAGTSTSTSTTITSKQKNMEPKSHTAYAQDMMTGSDDSSSYELGYSSDISFRLLLDFQGDNDMGFLQGLAG* 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0878 296 PANTHER MYB FAMILY TRANSCRIPTION FACTOR 1 245 - -
Vvi16g0878 296 MobiDBLite consensus disorder prediction 123 145 - -
Vvi16g0878 296 CDD SANT 69 112 IPR001005 -
Vvi16g0878 296 CDD SANT 16 61 IPR001005 -
Vvi16g0878 296 MobiDBLite consensus disorder prediction 217 243 - -
Vvi16g0878 296 Pfam Myb-like DNA-binding domain 67 112 IPR001005 -
Vvi16g0878 296 Pfam Myb-like DNA-binding domain 14 61 IPR001005 -
Vvi16g0878 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Vvi16g0878 296 Gene3D - 12 67 - -
Vvi16g0878 296 FunFam Myb transcription factor 11 67 - -
Vvi16g0878 296 SMART sant 66 114 IPR001005 -
Vvi16g0878 296 SMART sant 13 63 IPR001005 -
Vvi16g0878 296 ProSiteProfiles Myb-like domain profile. 9 61 IPR001005 -
Vvi16g0878 296 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 9 61 IPR017930 -
Vvi16g0878 296 SUPERFAMILY Homeodomain-like 11 108 IPR009057 -
Vvi16g0878 296 Gene3D - 69 148 - -
Vvi16g0878 296 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0878 Vvi-Chr16 16918859 16920865 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0878 1 292 MYB Transcription Factor Family AT3G61250 51.923 7.01e-102 298
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0878 Myb_DNA-binding 9.5e-16 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0878 K09422 - vvi:100253919 604.364