Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0876 ATGGGGTGTAATTCATTGGAGAAGTCGAAGACCAAGCCCAAACACCGAAAGGGGTTATGGTCACCGGAAGAAGATGCTAGGCTCAGAAACTATGTCCTCAAATATGGCCTTGGCTGCTGGAGCTCCGTCCCTGTTAACGCCGGTTTGCAAAGGAATGGAAAGAGCTGCAGATTAAGGTGGATTAACTACTTAAGACCAGGATTAAAACGCGGGATGTTTACGATCGAGGAGGAAGAGACGATCATGGCCCTTCATCGCTTGTTAGGCAACAAGTGGTCTCAGATAGCGCAGAATTTTCCTGGAAGAACTGATAATGAGATTAAGAACTACTGGCATTCATGTCTCAAGAAGAAAGTGGTGAAAGCTCAGGAAATGGAAGTTCATATGAACTCCCAATGCATCAACTCTAACTCACAGAGCATTGATTCTTCAACTTCACAAGAAAAGCCATCAATCCAACTTCCGGGTTTCGAATCGTTTGAAAACATGAAAGGATCATCTTCAACAGATACTGATCAGTCCATTCCACAGATGTTGGACTGTCCTAGAGTGGACACGCAGGAAAGCCCCTTGCCGAAGATTTTATTCGCAGAGTGGCTTTCTCTTGACCATATTTACGGCCAGCTCTTTGTTAATTCAGGCGAGTCAGTCATTTCCAAGGATACTCTTGATCAGCATGATCCAACCTTTCAAGACAATTTCACGCATGGTTTCCTACTGAACGAGGAGTCATATGTAGGTGAATTGCACCATGGCCTAAGCAATGATTCGTCCAGTGACATGTTTTCGCCGCAATTTAAGTTCGAGAGCCAGACTCCGGGAAGTGGGATATGTGATTTTGTGTATGGGGATGAAATATGCAGTGATTTCAACATGAACGGCCATGTAATGTACTGA 897 0.4448 MGCNSLEKSKTKPKHRKGLWSPEEDARLRNYVLKYGLGCWSSVPVNAGLQRNGKSCRLRWINYLRPGLKRGMFTIEEEETIMALHRLLGNKWSQIAQNFPGRTDNEIKNYWHSCLKKKVVKAQEMEVHMNSQCINSNSQSIDSSTSQEKPSIQLPGFESFENMKGSSSTDTDQSIPQMLDCPRVDTQESPLPKILFAEWLSLDHIYGQLFVNSGESVISKDTLDQHDPTFQDNFTHGFLLNEESYVGELHHGLSNDSSSDMFSPQFKFESQTPGSGICDFVYGDEICSDFNMNGHVMY* 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0876 298 Pfam Myb-like DNA-binding domain 70 114 IPR001005 -
Vvi16g0876 298 Pfam Myb-like DNA-binding domain 17 64 IPR001005 -
Vvi16g0876 298 FunFam MYB transcription factor 14 70 - -
Vvi16g0876 298 ProSiteProfiles Myb-like domain profile. 65 115 IPR001005 -
Vvi16g0876 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 12 64 IPR017930 -
Vvi16g0876 298 SMART sant 16 66 IPR001005 -
Vvi16g0876 298 SMART sant 69 117 IPR001005 -
Vvi16g0876 298 Gene3D - 72 149 - -
Vvi16g0876 298 CDD SANT 73 112 IPR001005 -
Vvi16g0876 298 FunFam MYB transcription factor 72 143 - -
Vvi16g0876 298 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 65 119 IPR017930 -
Vvi16g0876 298 CDD SANT 20 64 IPR001005 -
Vvi16g0876 298 Gene3D - 17 69 - -
Vvi16g0876 298 SUPERFAMILY Homeodomain-like 14 111 IPR009057 -
Vvi16g0876 298 PANTHER MYB DOMAIN PROTEIN 55 8 225 - -
Vvi16g0876 298 ProSiteProfiles Myb-like domain profile. 12 64 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0876 Vvi-Chr16 16907193 16908873 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0876 10 138 MYB Transcription Factor Family AT3G48920 63.566 4.96e-57 182
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vvi16g0876 Myb_DNA-binding 2.1e-12 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0876 K09422 - vvi:100241951 603.979