Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0872 ATGAGTGTAATTAGGGGGACCATGGGTTATATTGCACCGGAAATGATATCTAGGAATTTTGGCAATGTTTCCTACAAGTCAGATGTTTATAGTTTTGGAATGTTATTGATTGAAATGGTAGGAGGAAGGAAGAATATAGACACTACAGTAAAGAACACTAGCCAAGTATATTTTCCAGAATGGGTTTATAATCGTCTGGATAAAAGGGAAGAGTTGCACATTCCGATTGAGGAAGAAAATGATGGTGAAATAGCAAAGAAACTATTAATTATGGGACTTTGGTGCATTCAATGGTGCCCAATGAACCGTCCTTCCATGAAATTTATTATTCAGATGTTAGAAGGAGAAGGAAACAATTTAAGTATGCCTCCAAACCCATTTACTTCCATGGGCCCAACAAGAACAAGTCCAAACATGCATCAACAAGAGTTGGCAGTCATCTCAGAAATAGAGTAA 456 0.3728 MSVIRGTMGYIAPEMISRNFGNVSYKSDVYSFGMLLIEMVGGRKNIDTTVKNTSQVYFPEWVYNRLDKREELHIPIEEENDGEIAKKLLIMGLWCIQWCPMNRPSMKFIIQMLEGEGNNLSMPPNPFTSMGPTRTSPNMHQQELAVISEIE* 152
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0872 151 Gene3D Transferase(Phosphotransferase) domain 1 1 126 - -
Vvi16g0872 151 ProSiteProfiles Protein kinase domain profile. 1 128 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0872 151 PANTHER RUST RESISTANCE KINASE LR10-RELATED 3 136 IPR045874 GO:0004672
Vvi16g0872 151 SUPERFAMILY Protein kinase-like (PK-like) 2 114 IPR011009 -
Vvi16g0872 151 Pfam Protein kinase domain 3 111 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0872 Vvi-Chr16 16851591 16852046 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0872 5 126 Receptor kinase-like Gene Family AT5G39030 50.000 2.40e-38 135
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0872 Pkinase 1.8e-09 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0872 - - vvi:100267841 313.538