Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0870 ATGGGTGTGAAAAACCTCTGGGACATCTTGGAATCTTGCAAGAAAACTCTCCCACTTTACCACCTCCAGAACAAGAGGGTGTGCATCGATCTTTCATGTTGGATGGTTCAACTTCAAAATGTAAACAAATCTCATGCTTCAATCAAGGACAAGCTTTATCTCAAAGGCCTCTTTCACCGTCTTAGAGCTCTCATTGCTTTGAATTGTAGCCTTCTTTTTGTCACAGATGGATCAATCCCTGCAATCAAACTAGCCACTTACAGACGGCGCTTAAATTCAGGAACTGAGGTCACTCGAGATGAAACAAACTCCCATAATGTGCCTTCGCTCCGGAGAAATATGGGATCTGAATTCTCATGTATGATAAAGGAGGCAAAAGTCCTTGGCTTGGCACTTGGTATCCCTTGCTTAGATGGGATTGAAGAAGCTGAAGCACAGTGTGCATTGTTAAACTCAGAATCATTATGTGATGGATGTTTCACTTCAGATTCAGATGTTTTCCTTTTTGGTGCAAGGACAGTTTACAGAGACATTTGCCTTGGGGAAGGCGGTTATGTTGTTTGTTATGAAATGGCAGACATAGAGAGCACACTTGGGTTTGGAAGGAACTCCTTGATTACTCTGGCACTTCTTCTTGGTAGTGATTACTCTCAGGGAGTTCATGGGTTTGGGCCAGAGTCAGCATGCCAGATTGTTAAATCAGTTGGTGAAGAAGTTGTTCTCAAAAAAATTGCATTAGAAGGGATATCCTTTGCAAAGAAATCAAAGGGTTCAAGGAAACAGGGGCAAGTTCTTAAGTGCAATGACAAAGAGAATTGTTCAGACCATGAAATGAACATTAATGGATCTGAGCATAGTTCACAAAGGGAGTTCTTGCGAGTAATTGATGCTTATTTGAAACCAAAATGTCACTCTGCAGACTCTGATGCAGTGCATAGGGCTCTTGCTCTTCTTCCATTTCAACGCACTGAAGCTCAGAAGATATGTGCTCAGTTGTTTGAGTGGCCTCCTGAGAAAACAGATGAGTATATCCTTCCTAAGATCGCTGAAAGAGACTTGCGGCGATTTGCCAATTTGCGTTCAACTTCTTCAAACTTGGGAATTCATTTTCCGTTGCACGAGATACCAGTAAAATGCCCTATTTCTGGAATTATAAAGCACAGAAAAGTCCAAGGAAGAGAATGCTTTGAGGTTTCCTGGGAAGAGTTTGATGGCCTTAAATCCTCCATAATACCAGCAGAGCTTGTGAAGAGTGCTTGTCCTGAAAAGATTGTGGAGTTTGAAGGGAGAAAACCCCAAGAGAAGAAACAAAATCATCGTAAACCAAGGCCAAAGAAATCCAATAACAGAACTCCCTTGGCTGAGATTGATAAACAACTCCAAAATCTATTGCTTGATATAGAATCAGGAGGCAATTCTTTTCAAAATGTTTCATTTTCTTCAAGCATGACACCATCCAAAACCCAAATTGATGCAACCAAAGCAGCAAAAACACAATATATGTTGCTTGATACAGAGTCAGAGAGCGACAATGACAATCACAATGAAGCCATAATTTGCCATCAGAATGGTCGATGCGGTGCTGAAATAGTCATTGATCTGCTAAGCCCTTCCCCAGCAATACGTGCCCGAAAGGTTTCGAAGTGCCAACAAGGCAATAATGGCCAACAAATTGATGTAATTGATTTGAGTGATTGA 1698 0.4134 MGVKNLWDILESCKKTLPLYHLQNKRVCIDLSCWMVQLQNVNKSHASIKDKLYLKGLFHRLRALIALNCSLLFVTDGSIPAIKLATYRRRLNSGTEVTRDETNSHNVPSLRRNMGSEFSCMIKEAKVLGLALGIPCLDGIEEAEAQCALLNSESLCDGCFTSDSDVFLFGARTVYRDICLGEGGYVVCYEMADIESTLGFGRNSLITLALLLGSDYSQGVHGFGPESACQIVKSVGEEVVLKKIALEGISFAKKSKGSRKQGQVLKCNDKENCSDHEMNINGSEHSSQREFLRVIDAYLKPKCHSADSDAVHRALALLPFQRTEAQKICAQLFEWPPEKTDEYILPKIAERDLRRFANLRSTSSNLGIHFPLHEIPVKCPISGIIKHRKVQGRECFEVSWEEFDGLKSSIIPAELVKSACPEKIVEFEGRKPQEKKQNHRKPRPKKSNNRTPLAEIDKQLQNLLLDIESGGNSFQNVSFSSSMTPSKTQIDATKAAKTQYMLLDTESESDNDNHNEAIICHQNGRCGAEIVIDLLSPSPAIRARKVSKCQQGNNGQQIDVIDLSD* 566
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0870 565 MobiDBLite consensus disorder prediction 427 453 - -
Vvi16g0870 565 SMART xpgineu 130 200 IPR006086 GO:0004518
Vvi16g0870 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 205 220 IPR006084 -
Vvi16g0870 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 24 38 IPR006084 -
Vvi16g0870 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 71 90 IPR006084 -
Vvi16g0870 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 150 170 IPR006084 -
Vvi16g0870 565 PRINTS Xeroderma pigmentosum group G/yeast RAD superfamily signature 129 146 IPR006084 -
Vvi16g0870 565 SMART HhH_4 202 235 IPR008918 GO:0003677|GO:0003824
Vvi16g0870 565 PANTHER FLAP ENDONUCLEASE FAMILY MEMBER 1 494 IPR006084 -
Vvi16g0870 565 Pfam XPG I-region 133 215 IPR006086 GO:0004518
Vvi16g0870 565 SUPERFAMILY PIN domain-like 2 215 IPR029060 -
Vvi16g0870 565 SMART xpgn3 1 97 IPR006085 GO:0004518
Vvi16g0870 565 Pfam XPG N-terminal domain 1 91 IPR006085 GO:0004518
Vvi16g0870 565 SUPERFAMILY 5' to 3' exonuclease, C-terminal subdomain 200 360 IPR036279 -
Vvi16g0870 565 CDD PIN_GEN1 2 198 - -
Vvi16g0870 565 Gene3D - 201 260 - -
Vvi16g0870 565 Gene3D - 2 199 - -
Vvi16g0870 565 SUPERFAMILY Chromo domain-like 381 433 IPR016197 -
Vvi16g0870 565 FunFam flap endonuclease GEN-like 2 2 199 - -
Vvi16g0870 565 FunFam Flap endonuclease GEN-like 1 200 258 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0870 Vvi-Chr16 16810894 16818602 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0870 1 247 Core DNA Replication Machinery Family AT5G26680 24.345 6.65e-13 68.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0870 K15338 - vvi:100256642 1139.41