LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0823	ATGTCTAGGCCACCGGTGGAGCAGAGCGGCGGCGAGTCACAGAAATCTCTTCCGACGCCGTTTCTGACGAAAACCTATCAGCTGGTTGAGGATCGGACAGTGGACGATGTGATTTCGTGGAATGAAGACGGATCTGCTTTCGTCGTGTGGAACACTGCCGTGTTGGCCAGAGATTTGCTTCCTAAGTACTTCAAGCACAACAATTTCTCCAGCTTCGTTCGACAACTTAACACCTACGGATTTCGAAAGGTCGTACCTGATCGATGGGAATTCTCCAACGACTGCTTTCGCCGAGGCGAAAAACGCCTTTTATGCGACATACAACGGCGGAGAATCTCTTCGACGGCCCCGATCTCGCCGGTATCGTCGTCAAATTGTGCTGACGAACGATTGATCTCGTCGAACTCGCCCCCGGCGACCACGACCACACCACATGCCACCAGTAATACTGCCGGACTGATAGATGAAAATGAAAGATTAAGGAAAGAGAACGTGGAGCTTAATCGAGAACTTAACCGGATGAAGACTCTTTGCAACAACATCTTCGCTCTGATATCGTCAAACTATACTAACAATATTTTCGGAAATGTTTCGCAAACGGACAAACCTCTGAATCGGTTCCCGGAGAAGCAGTTCTCCAGCGAGATGATGATAGAGGAAGAAATGACTCCTCGATTGTTCGGTGTTGCCATTGGGGCGAAGCGTGCGAGGGAAGGAGAGGGTGGGTTTGGTGGCAGACCCGGATCCGGTACAGGAACTCCAACGGCCTTGGTCGGAGGTGAAATCTGA	789	0.507	MSRPPVEQSGGESQKSLPTPFLTKTYQLVEDRTVDDVISWNEDGSAFVVWNTAVLARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDRWEFSNDCFRRGEKRLLCDIQRRRISSTAPISPVSSSNCADERLISSNSPPATTTTPHATSNTAGLIDENERLRKENVELNRELNRMKTLCNNIFALISSNYTNNIFGNVSQTDKPLNRFPEKQFSSEMMIEEEMTPRLFGVAIGAKRAREGEGGFGGRPGSGTGTPTALVGGEI*	263

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0823	262	MobiDBLite	consensus disorder prediction	239	262	-	-
	Vvi16g0823	262	Pfam	HSF-type DNA-binding	21	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0823	262	PRINTS	Heat shock factor (HSF) domain signature	59	71	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0823	262	PRINTS	Heat shock factor (HSF) domain signature	72	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0823	262	PRINTS	Heat shock factor (HSF) domain signature	21	44	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0823	262	MobiDBLite	consensus disorder prediction	116	152	-	-
	Vvi16g0823	262	ProSitePatterns	HSF-type DNA-binding domain signature.	60	84	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0823	262	Coils	Coil	150	177	-	-
	Vvi16g0823	262	SMART	hsfneu3	17	110	IPR000232	GO:0003700\|GO:0006355\|GO:0043565
	Vvi16g0823	262	SUPERFAMILY	"Winged helix" DNA-binding domain	18	110	IPR036390	-
	Vvi16g0823	262	PANTHER	HEAT SHOCK TRANSCRIPTION FACTOR	12	192	IPR027725	-
	Vvi16g0823	262	FunFam	Heat stress transcription factor B-4	13	111	-	-
	Vvi16g0823	262	Gene3D	-	13	111	IPR036388	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0823	Vvi-Chr16	16197944	16198817	Dispersed/Wgd

Functional genes information

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0823	1	237	HSF	AT5G62020	52.075	1.27e-81	245

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	HSF	Vvi16g0823		HSF_DNA-bind	9.1e-32	CL0123

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0823	K09419		-	vvi:100243443	477.633