Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0818 ATGGAGGATCAACATGAAAGGGTTCCAGTGGATGGAAGAGTTTTAGTGGAGGAAAAGGTTCCAGTGGAGCAACTGGTTCCAGTGAAAAGGGTTCCTGTGGAGGAAAGGTTTCATTTAGAAGAAAGGGTTCCAGTGGAGGAAAGAGTTCTGGTGGAGGGAAGGATTCCAGTGGAAGAAAATTTCGATCCAAGTGTTATGGGGAGGATCAATGAAGATGGGTATGAGAGCATGTCTGGAAGTGGGAACTTAGATGGTGGATTGGAGGATGAGCAAGAAACCTTGGTACTTGAGAGGCCGGCCAAGAAACTGAAATACCATCGACATACTCAAGAGCAAATTAATGAGCTTGAAACTTGCTTCAAGGAATGGCCTCATCCTGACGAGAAACAAAGGTTGGACCTCAGTAGGAAGCTCAACTTGGAGCCTAGACAAGTGAAGTTCTGGTTTCAGAACCGGCGAACCCAGATGAAGAACCAGTTGGAGCGCCATGAGAATGTAATGCTTAGACAAGAAAATGACAAGCTTCGGGTTGAGAATGTTGCAATTAAGGATGCTGTGAGGAACCCAATATGCAACCACTGTGGTGGTGTGGCAATGCTTGGCAACATAACTATTGAAGAGAATCAACTAAGGGTTGAGAATGCCCAGTTAAGGGATGAACTAAGTCGGATCTGTGGCCTAGCAGAGAAGTTCTTGGGCAGGCCTGTCACACCTTTGGCGAGTCCCATTGCTCTACCAAGACCAAGCTCAAATTTGGAACTTGAGGTAGCGGGAAATGGGTTTGGTGGTTTAAACTCGGGGGGCACTCCCTTACCAATGGGGCCTCTTACTAGGCCAGGCATGATGGGTGTCGAAAAGCCCTTTAACAGCTCTGTGTTTGTGGAGCTTGCAGTGACTGCTATGGATGAATTGCTTCGGTTGGCTCAGGCTGATAGTCCCATTTGGATGACAAGCTTGGATGGAGGAAAGGAAACATTGAACCCTGTAGAGTACATGAGGACATTTTCTCCTTGTATTGGCCTGAAGCCCTCCGGCTTTGTAACTGAGGCTTCAAGAGAGACTGGTATGGTAATGATCAACAGTTTAGCTCTTGTAGAGACATTGATGGATGGGAGTCGATGGGCACAAATGTTCCCATGTGTGATTGCTAAAGCTTCTACAACTGATGTGCTATCAAGTGGTATTGGAAGAACTAGGCATGGTGCTCTGCAACTGATGCATGCTGAGTTGCAAGTTCTTTCACCATTGGTACCGGTCCGGCAAGTGAAGTTTCTCCGGTTTTGCAAGCAACATGGGGAAGGATTATGGGCTGTGGTTGATGTGTCCATCGACACTGCTCTAGATGGTGCGAGCATAAATTCATTTGTTAACTGCCGACGACTTCTTTCTGGCTGTGTCGTGCAAGATCTTTCAAATGGTTACACTAGGGTTACCTGGATAGAACATTCAGAATATGATGAGAGTGCCGTCCACTATCTCTACCGATCCTTACTGAGCTCTGGATTGGGGTTTGGCGCACTGAGATGGCTTGCCACCTTACAGAGGCAGTGTGAGAGCATTGCAATCCTTTTGTCATCAACCGTCCCCTGCGAAGATCATCCAGTGCTGACACAAGCTGGTAGGAGAAGTCTGCTACAACTGACAAACCGAATGAGGGATAACTTCTGTGCTGGGGTTTGTGCTTCAACTGTTCGGATGTGGAACAAGCTCCATGTTGCTAGTCTTGGGGAGGATGTCAAGGTCATGACCCGGAAAAGTATGAATATTCCTGGTGAGCCTCCTGGAGTCATCTTGAGTGCTGCAACCTCTGTATGGATGCCTATAATGCATCAACAGTTATTTAACTTCTTGAGAGATGAGAGACAGAGGAGCAAGTGGGACATTTTATCCAATGGTGGGCCAATGCAAGAGATGATTCATATTCCAAAGGGCCAAACAAGTAGCAACTGTGTTTCTCTTCTTCGCCCTAATGTGAGTTAG 1980 0.4687 MEDQHERVPVDGRVLVEEKVPVEQLVPVKRVPVEERFHLEERVPVEERVLVEGRIPVEENFDPSVMGRINEDGYESMSGSGNLDGGLEDEQETLVLERPAKKLKYHRHTQEQINELETCFKEWPHPDEKQRLDLSRKLNLEPRQVKFWFQNRRTQMKNQLERHENVMLRQENDKLRVENVAIKDAVRNPICNHCGGVAMLGNITIEENQLRVENAQLRDELSRICGLAEKFLGRPVTPLASPIALPRPSSNLELEVAGNGFGGLNSGGTPLPMGPLTRPGMMGVEKPFNSSVFVELAVTAMDELLRLAQADSPIWMTSLDGGKETLNPVEYMRTFSPCIGLKPSGFVTEASRETGMVMINSLALVETLMDGSRWAQMFPCVIAKASTTDVLSSGIGRTRHGALQLMHAELQVLSPLVPVRQVKFLRFCKQHGEGLWAVVDVSIDTALDGASINSFVNCRRLLSGCVVQDLSNGYTRVTWIEHSEYDESAVHYLYRSLLSSGLGFGALRWLATLQRQCESIAILLSSTVPCEDHPVLTQAGRRSLLQLTNRMRDNFCAGVCASTVRMWNKLHVASLGEDVKVMTRKSMNIPGEPPGVILSAATSVWMPIMHQQLFNFLRDERQRSKWDILSNGGPMQEMIHIPKGQTSSNCVSLLRPNVS* 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0818 659 Coils Coil 153 173 - -
Vvi16g0818 659 SUPERFAMILY Homeodomain-like 90 159 IPR009057 -
Vvi16g0818 659 Gene3D - 355 519 IPR023393 -
Vvi16g0818 659 ProSiteProfiles START domain profile. 286 522 IPR002913 GO:0008289
Vvi16g0818 659 Gene3D - 90 175 - -
Vvi16g0818 659 SUPERFAMILY Bet v1-like 567 640 - -
Vvi16g0818 659 SUPERFAMILY Bet v1-like 293 519 - -
Vvi16g0818 659 SMART HOX_1 101 163 IPR001356 GO:0003677
Vvi16g0818 659 Coils Coil 200 220 - -
Vvi16g0818 659 ProSitePatterns 'Homeobox' domain signature. 134 157 IPR017970 GO:0000981|GO:0006355
Vvi16g0818 659 CDD START_ArGLABRA2_like 291 518 - -
Vvi16g0818 659 ProSiteProfiles 'Homeobox' domain profile. 99 159 IPR001356 GO:0003677
Vvi16g0818 659 FunFam Homeobox-leucine zipper protein HDG1 88 175 - -
Vvi16g0818 659 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 101 657 IPR042160 -
Vvi16g0818 659 SMART START_1 295 519 IPR002913 GO:0008289
Vvi16g0818 659 CDD homeodomain 104 159 IPR001356 GO:0003677
Vvi16g0818 659 Pfam Homeodomain 104 158 IPR001356 GO:0003677
Vvi16g0818 659 Pfam START domain 296 519 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0818 Vvi-Chr16 16144827 16148015 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0818 75 658 Homeobox Transcription Factor Family AT3G61150 55.791 0.0 677
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vvi16g0818 START 6.1e-50 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0818 K09338 - vvi:100267477 1298.11