Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0802 ATGGCACCTTCACGGGTGGCTGGAAGTTTAGCTCAATCTTCCTCAAGTTCTGGTATCTTTTTCCAAGGAGACGGGCAGTCTCAGGCTGTAGTTAACTCTCACATGAGTTCATCATTTGGGAACTCGTCAAATTCTATTCCTGGAACGGGGCGTTCTAATCTTGGTCCGGTTTCTGGGGACGTGAATAACACAGTTTTGAACAGTGTAGCAAATTCTGGGCCGAGTGTTGGGGCGAGTTCGTTGGTTACAGATGCCAACTCGGCACTTTCAGGAGGTCCTCACTTGCAGAGAAGTGCAAGCATCAATACAGAGTCTTACATGCGCTTGCCTGCGTCACCCATGTCGTTCTCATCGAATAATATTAGTATTTCTGGCTCCTCAGTCATGGATGGGTCCTCTGTAGTGCAGCAGAGCTCTCATCAAGATCCAAGCTCTCAGCAAGCGAATCAAAGTCAGCAGCATCAAGGAGCTTCAAGTGCTACATCCTTGCCCACATCACAAGCAGGCCAAGTTTCACTTTCCATGAATCCACGGGTTCCTGCCTCATTCATTCAGGAACCCAATAATCCATCCCAGGTGCATAAGAAAGCCCGACTGGATATCAAACAGGAAGACATTTTGCCCCAGCAGATTGTGCAACAAATACTTCAAAGACAGGACCCAATGCAGTTGCAAGGCCACAATCCCCAGTTTCAAAGCTTGATTCAACAGCAAAGACTACGACAGCAACAGCAGATGTTGCAGTCCATGCCTCAGCAGATGCAGCGAGCCCACTTGCAGCAGCAACATCAGCAGCAACAGCAGCAGCAACTGCAGTTGAGACACCACCTGCAACAACAGGGCATGCAACCAATATCTGCCATGAAGCGCCCCTATGATAGTGGTGTATGTGCTCGTCGGCTAATGCAATACCTATATCACCAGCGGCAACCTGACAAGACTATTGCCTATTGGAGGAAATTTGTGGCAGAGTATTATTCACCCCGTGCAAAGAAAAGATGGTGCTTGTCCTTATATGACAATGTTGGAAATCATGCACTGGGTGTTTTCCCCCAGGCAGCTATGGATGCATGGCATTGTGAAATTTGCAATTCTAAATCCGGAAGGGGGTTTGAGGCAACTTTTGAAGTACTCCCTCGACTTAATGAAATAAAATTTGGCAGTGGTGTCATTGATGAGCTTTTGTTTCTGGACTTGCCACGTGAATGTAGATTTTCTTCAGGAATAATGATGTTAGAATATGGGAAAGCAGTTCAGGAGAGTGTATATGAGCAACTCCGAGTTGTTCGTGAGGGTCAGCTTCGTATCATATTTACCCCTGATTTAAAGATATTATCCTGGGAATTTTGTGCCCAACACCATGAAGAACTTCTTCCTCGTAGGTTGGTAGCCCCACAGGTGAATCAGTTGGTGCAGGTTGCACAGAAATGCCAAAGCACAATTGCTGAAAGTGGATCTGATGGGATTTCTCAGCAGGACTTACAAACAAATAGCAACATGGTTTTGACAGCTGGGCGTCAGCTTGCAAGAAGTTTAGAGTCTCAGTCACTGAATGATCTGGGATTTTCCAAAAGATATGTGAGGTGCTTGCAGATATCCGAGGTTGTCAATAGTATGAAAGACTTGATTGACTTCTGCAGGGAGAACAAAGTTGGGCCAATTGATGGGTTGAAAAGTTATCCTCGACATGCTAGTGCAGTGAAGCTTGAGATGCAAAAGATGCAGGAGATGGAACAGCTTGCAAATGTTCAGGGTCTGCCGACGGATCGCAATACCCTTAATAAGCTAATAGCATTGCATCCTGGTCTAAACAGCCATATGAGCAATAATCCTCACATGGTTAATCGTGGAGCTTTAAGTGGCTCGGCACAAGCTGCTTTAGCACTGACCAACTACCAGAATCTGCTGATGAGACAAAACTCCATGAATTCAAACCCTAGCTCGCTTCAGCAAGAGGGGCCATCTTCATTTAATAGCTCTAACCAGAGTCCATCTTCAACATTTCAGGGCCCTGCTACTTTGATTTCGGGATCCATGCACAACTTACCTGGTAGTGGTTTTTCCAGTCCCCATCTACCTCCTCAACAGCAGCAGCAGCAGCAGCAGCAACAGCAACAACAACAACAGCGCTCATTGAACCCTAGTAGCTTGCTCCAACAGAATCCTGGTCTATCCTCTCAAAGCAGCCAGGCTCTACAACAGCAGATGATCCAGCAAATGTTGCAGGAGATGACAAATAATTGCGGGCCAGGGATGCAGCAGCAGTCCCTTTCTGGCCAGAACGTAAATGGGAGCATGACGAGGAGTGGGATGGGGTTTGGGAACAACAGTGCAGCAGCCACTGTAGCCAGCCCCAACTTATCAGGAAGCATTGGGGGGCCACCACTGAGCAAGAGTAACAGTTTCAAAGGGCCATTGAATAGTGACTCTTCGGCTGGGGGTGCTAATAGTGGATTCAACCAAAAAGCATCAGATTTGGCACATAATCTGCATTTGTCGGATGAAATGGTTCAGGATATAGCCCGTGAATTTCCGGATAATGGGTTCTTTAACAGTGACCTTGAGGATAATATGAGCTATGGCTGGAAAGCATGA 2595 0.4671 MAPSRVAGSLAQSSSSSGIFFQGDGQSQAVVNSHMSSSFGNSSNSIPGTGRSNLGPVSGDVNNTVLNSVANSGPSVGASSLVTDANSALSGGPHLQRSASINTESYMRLPASPMSFSSNNISISGSSVMDGSSVVQQSSHQDPSSQQANQSQQHQGASSATSLPTSQAGQVSLSMNPRVPASFIQEPNNPSQVHKKARLDIKQEDILPQQIVQQILQRQDPMQLQGHNPQFQSLIQQQRLRQQQQMLQSMPQQMQRAHLQQQHQQQQQQQLQLRHHLQQQGMQPISAMKRPYDSGVCARRLMQYLYHQRQPDKTIAYWRKFVAEYYSPRAKKRWCLSLYDNVGNHALGVFPQAAMDAWHCEICNSKSGRGFEATFEVLPRLNEIKFGSGVIDELLFLDLPRECRFSSGIMMLEYGKAVQESVYEQLRVVREGQLRIIFTPDLKILSWEFCAQHHEELLPRRLVAPQVNQLVQVAQKCQSTIAESGSDGISQQDLQTNSNMVLTAGRQLARSLESQSLNDLGFSKRYVRCLQISEVVNSMKDLIDFCRENKVGPIDGLKSYPRHASAVKLEMQKMQEMEQLANVQGLPTDRNTLNKLIALHPGLNSHMSNNPHMVNRGALSGSAQAALALTNYQNLLMRQNSMNSNPSSLQQEGPSSFNSSNQSPSSTFQGPATLISGSMHNLPGSGFSSPHLPPQQQQQQQQQQQQQQQRSLNPSSLLQQNPGLSSQSSQALQQQMIQQMLQEMTNNCGPGMQQQSLSGQNVNGSMTRSGMGFGNNSAAATVASPNLSGSIGGPPLSKSNSFKGPLNSDSSAGGANSGFNQKASDLAHNLHLSDEMVQDIAREFPDNGFFNSDLEDNMSYGWKA* 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0802 864 MobiDBLite consensus disorder prediction 640 773 - -
Vvi16g0802 864 MobiDBLite consensus disorder prediction 32 59 - -
Vvi16g0802 864 MobiDBLite consensus disorder prediction 127 172 - -
Vvi16g0802 864 Pfam LIM-domain binding protein 300 558 IPR029005 -
Vvi16g0802 864 MobiDBLite consensus disorder prediction 243 269 - -
Vvi16g0802 864 PANTHER LIM DOMAIN-BINDING PROTEIN 41 850 IPR029005 -
Vvi16g0802 864 MobiDBLite consensus disorder prediction 790 820 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0802 Vvi-Chr16 15986630 15991987 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0802 288 564 C2H2 Transcription Factor Family AT1G43850 59.498 6.47e-110 356
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0802 - - vvi:100265879 1469.52