Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0796 ATGAATTCAAGATGTGCAGCTTGCAAATATCTGAGAAGAAGGTGTCCTCCAGATTGTATTTTCTCTTCATATTTTCCTTCAAACGATCCTCAAAGATTTGCTTCTGTCCATAGAATTTATGGTGCCAGCAATATTGGAAAGATGCTACAGCAAATTCCACCACATTTGAGGGCAGAAGCAACGGAGTCAATGTATTATGAGGCACAATGTCGAGTTGCAGACCCAGTGTACGGGATTGTGAAGACCATATCTCTACTAAATCAGGAGATACACCATGCCCAAAGCCAATTAGCAAAGGTTCAAGCTCAGATTGCATTCTACAATGCTCAAGTGCATGGTAACAACAAAATTCAAAATGTTGAGCTCCCTTCTTCCAACTTCAACAACTCCTTGGCAAACCAAGGCGATGCCTTCCCCCACCCAACTCTACCGCTCTCCATCCGACCATCTTGGTCCATGTAG 462 0.4329 MNSRCAACKYLRRRCPPDCIFSSYFPSNDPQRFASVHRIYGASNIGKMLQQIPPHLRAEATESMYYEAQCRVADPVYGIVKTISLLNQEIHHAQSQLAKVQAQIAFYNAQVHGNNKIQNVELPSSNFNNSLANQGDAFPHPTLPLSIRPSWSM* 154
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0796 153 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 3 127 - -
Vvi16g0796 153 Pfam Lateral organ boundaries (LOB) domain 4 101 IPR004883 -
Vvi16g0796 153 ProSiteProfiles LOB domain profile. 3 104 IPR004883 -
Vvi16g0796 153 Coils Coil 83 110 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0796 Vvi-Chr16 15894465 15895136 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0796 3 111 AS2 family AT3G26660 63.303 1.16e-49 154
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi16g0796 LOB 3e-37 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0796 - - vvi:100243436 319.316