Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0795 ATGTCTGCAGATGATAAAGAAAGTTCCATGTTAAGGGGTTTAGAAGCTGGAGCTGCATTTTACATTGTGAAGCCTGTAAACTATGATGACCTTAAGAACTTATGGCAATATGCTGTTGGCCCAAAGAAAGGTAAATCCCATATTGTCATGCAGGAAATTGAAAGGACTCAAGGGGCATCACAACTTGAGAAAACATCCAATAATGAAGTAGAGTCATTGATGAATGAAGAGAAGCATAATAAGAGAGATTCCAAGAGAAAGACATTGAAAAAGGCTAATGAAGGCAATGGAAAAGAAAAATCTGAGACTGTTGCCCCCAAGAAGGCAAAGGTGATCTGGACATCTGCACTTCATAACCGGTTCTTGGAAGCTGCAAGAAAAATAGGCCTTGAAAGGGCTGTTCCAAAGAGGATTCTTGAGATAATGAATGTGCCAGGATTAACTAGAGAAAATGTGGCTAGCCATCTGCAGAAATATAGAATTTTTCTGAAGCGTGTAATGGAAACAAGCAGCTCTGGAACTATCACTGGAAAGAACATTTCAGAGAGAACTCTCAGATCAAGCTTTGCCACAGGGCATCCTTCATTAATGGTTAATGCTCTCCAGCGAGGTTTCCCACAGTTTCTGGACCATCAACAAGTAGGAGCATCCCAGTTGCAACCAAGATTCCTCGGCAACCTCCCAATTGCTAATGCTTCAAGCCTTAGCAGCACAATTTTCCCCAATCAGCAAGCTTCAAGTGGTAACCCTATACCTCAACTTGGATATGGACAAGCCCATTCAATGAACAAACACGCTTATCTCCAGCAACCAACTTTTGGCAACACTAAGGCTCTCTATCAAGCCAACGGTGCAGGTATGAATGCTACAAATCCAATGCAAATGTACCAACAGAAAACTCAAGCAAGATCAGAACTTGTCCCAAATGCCATGTCTAACAACACTTTCACTGCCTTTGGAGTTTCTGATCCCAACAACATTCATGGAATCCAGAACAATGGTGTCAACAATTCTGATATGACACTAAATATTGCTGGTTCTGGTCAAATAGGATTTGCTGGTGGTGGGATATTGAATGGTTTCAATGGCGGTTACGGCTTGTTCGATGGAAACAATGGTATTACACATGCATCATTGAGAAATGTGAATTCTGGTTATTATGCTGAAGGAGCATGTTCTTCCGCAGGGTTTGGGGGCACAAACCAAATCCCACCTAGGTTCTCCAATGTCATCCAACAAGAAAATAATCCAATGCTGCTGCCACAACAGAACAATCTAGGGGAAGGAGGGGAGGACAATAGCTATTTGCTTGATCAACTGAGGAATAATACTGCTCCTATGGAGAACACTTCTATCTCACAATTTGCGGAAAATGATCTTGATGAAATTTTCGGGCAGAACCAGCCTAAAAATCCATCCTATAATGAGGTACTATTGAAACTGATTAATTACTTTCTTGGCTGCACAGGATATATATTCTTTATTCCAATTTGA 1494 0.4116 MSADDKESSMLRGLEAGAAFYIVKPVNYDDLKNLWQYAVGPKKGKSHIVMQEIERTQGASQLEKTSNNEVESLMNEEKHNKRDSKRKTLKKANEGNGKEKSETVAPKKAKVIWTSALHNRFLEAARKIGLERAVPKRILEIMNVPGLTRENVASHLQKYRIFLKRVMETSSSGTITGKNISERTLRSSFATGHPSLMVNALQRGFPQFLDHQQVGASQLQPRFLGNLPIANASSLSSTIFPNQQASSGNPIPQLGYGQAHSMNKHAYLQQPTFGNTKALYQANGAGMNATNPMQMYQQKTQARSELVPNAMSNNTFTAFGVSDPNNIHGIQNNGVNNSDMTLNIAGSGQIGFAGGGILNGFNGGYGLFDGNNGITHASLRNVNSGYYAEGACSSAGFGGTNQIPPRFSNVIQQENNPMLLPQQNNLGEGGEDNSYLLDQLRNNTAPMENTSISQFAENDLDEIFGQNQPKNPSYNEVLLKLINYFLGCTGYIFFIPI* 498
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0795 497 Coils Coil 67 87 - -
Vvi16g0795 497 Gene3D - 105 167 - -
Vvi16g0795 497 FunFam Two-component response regulator 105 167 - -
Vvi16g0795 497 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 105 164 IPR017930 -
Vvi16g0795 497 SUPERFAMILY Homeodomain-like 105 165 IPR009057 -
Vvi16g0795 497 PANTHER HOMEODOMAIN-LIKE SUPERFAMILY PROTEIN-RELATED 54 431 IPR044841 GO:0003700|GO:0006355
Vvi16g0795 497 ProSiteProfiles Response regulatory domain profile. 1 39 IPR001789 GO:0000160
Vvi16g0795 497 MobiDBLite consensus disorder prediction 56 105 - -
Vvi16g0795 497 NCBIfam myb-like DNA-binding domain, SHAQKYF class 108 161 IPR006447 GO:0003677
Vvi16g0795 497 SUPERFAMILY CheY-like 1 47 IPR011006 -
Vvi16g0795 497 Pfam Myb-like DNA-binding domain 113 160 IPR001005 -
Vvi16g0795 497 MobiDBLite consensus disorder prediction 70 105 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0795 Vvi-Chr16 15871280 15873030 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0795 1 166 Response Regulator Gene Family AT3G16857 42.077 2.10e-35 137
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-G2-like Vvi16g0795 Myb_DNA-binding 1.1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0795 - K14491 vvi:104882162 899.042