Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0794 ATGGACAATGAGATAAATAGCCCAAACCAGCAGTCTCACAAGACCATAACCTCTGCTGCTGGCGTAAATGTTATGGTTGTAGATGATGATGTTATATGTCTCTCAATAGTTGCAGGAATTCTTAGAACACGGAGATATCAAGTTGTGACTGTTAAAAACCCCCTAGACGCTTTGGCTACACTTCGATCGGGGAGTGATTTCTTCCACCTTGTAGTAACGGATGTGCACATGCCTGAGTTGGATGGATTTGAATTTCAAAAGAAAGTCCAGGAAGAATTCCAGCTCCCTGTAGTCATGATGTCTGCTGATGACAAAGAAAGTTCCATGTTGAAGGGTTTAGAGGCTGGAGCTGCATTTTACATTGTGAAGCCTGTGAACTATGATGACCTTAAGAACATATGGCAATATGCTGTTGGTCCAAGGAAAGATAATTCTGTTGACATGCAGGATGTTGGACCTGCTCCAGAGGAGGAATCGCCAGTTGAGAAAACACCTGATGATCCTGTCGATATAGAGTCTGTATCATCAGTAAATGAAGTGAACCAGAGTAAGAGAGATCCCAAGAAAAAGGCCTCCAAAAGGGTTATTGAAGACAGTGGAAAAGAGAACAGTGATGCTGTTTCACCCAAAAGGACAAAGGTCGTATGGACAAGTGCGCTTCATACCCGATTCTTGGAAGCTGTAAGAAAAATAGGCCTTGAAAGGGCTGTTCCCAAGAGGATTCTTGAGCTCATGAACATGCCAGGATTAACTAGGGAAAATGTGGCTAGCCATCTTCAGAAGTACAGAATCTTTCTGCGACGCGTAGCTGAAGCAAGCAACTCTACTGGGAGTAGCACAGGAAAGCGCATCGCGGAAAGAACTCTAAGATCGAGCTTTGCCACCGGACACCCATCACTGTTGATTAGTGCTCTCCAGCAAGGGTTCCCACAGCTTCTGAACCAGCAACTAGTAGGATCATTGCTGCAACCAGGATTCCCAGGAAATATCCAGATTAATGATCCCACCCTTAGAGGAGCAATTTTCCCTAATCAGCAAGCTTCAAGCAGTAACCCTAGACCTCAACTTGGACATGGACAGGGACATTCAATGAACAATCAAGCTTATTTGCAGCAACAACCTTTTGGCAACACTAATGCTCTCCCCGAAGCCAATGGTGGAGTTATGAATGGTGCAAATCCAATGCAAATGAACCAACAGCAAACTCAAGCAAGATCAGAACTTGTTCCAAATGCCATGTCTAACAACAACTTCACCGTCTTTGAGGGTTCTGGAAACATTCATGGGGTACAAAACATGGAATCTTTCAACAATTCACATCTGCCCCCAAATTTTGACTGCAACAACAATATTGCTGGCTCAGGCCCAATGGGATTGTCAAATGGTTTTAATGGCAACTATGGCTCAATCGCTGGGAACATTAACGGAAATCTTGCATTGTCGGAGAGTGTGAATTCTGGTTATTATGCTCAAGGAGCATATTCTTCTGTAGGGTTAAGGAGCACGAACCAACCTCCAACAAGGTTCTCTAATATAACCCAACAGAACAATAATCCAATGCTGCTGCCTTCACTGTCACTGCTGCAACAGAATGATCTTGGGAATGGAGGAGGAGACAATAGCTATTTGCTTGATCATCTGATGAATACTACTGCTCCCATGGAGAGCGTTTCTCCCCTTCAATTTGCCGAAAGTGAACTCGATGAACTTTTCCAAGGTCATCTCAACAATCTACATAATAATGAGGTACTGAGACTAGTTGCTTTTTTGGTTGCATAA 1779 0.4362 MDNEINSPNQQSHKTITSAAGVNVMVVDDDVICLSIVAGILRTRRYQVVTVKNPLDALATLRSGSDFFHLVVTDVHMPELDGFEFQKKVQEEFQLPVVMMSADDKESSMLKGLEAGAAFYIVKPVNYDDLKNIWQYAVGPRKDNSVDMQDVGPAPEEESPVEKTPDDPVDIESVSSVNEVNQSKRDPKKKASKRVIEDSGKENSDAVSPKRTKVVWTSALHTRFLEAVRKIGLERAVPKRILELMNMPGLTRENVASHLQKYRIFLRRVAEASNSTGSSTGKRIAERTLRSSFATGHPSLLISALQQGFPQLLNQQLVGSLLQPGFPGNIQINDPTLRGAIFPNQQASSSNPRPQLGHGQGHSMNNQAYLQQQPFGNTNALPEANGGVMNGANPMQMNQQQTQARSELVPNAMSNNNFTVFEGSGNIHGVQNMESFNNSHLPPNFDCNNNIAGSGPMGLSNGFNGNYGSIAGNINGNLALSESVNSGYYAQGAYSSVGLRSTNQPPTRFSNITQQNNNPMLLPSLSLLQQNDLGNGGGDNSYLLDHLMNTTAPMESVSPLQFAESELDELFQGHLNNLHNNEVLRLVAFLVA* 593
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0794 592 CDD REC_typeB_ARR-like 33 138 - -
Vvi16g0794 592 Pfam Myb-like DNA-binding domain 214 263 IPR001005 -
Vvi16g0794 592 SUPERFAMILY CheY-like 22 139 IPR011006 -
Vvi16g0794 592 MobiDBLite consensus disorder prediction 182 208 - -
Vvi16g0794 592 MobiDBLite consensus disorder prediction 341 363 - -
Vvi16g0794 592 Gene3D - 208 270 - -
Vvi16g0794 592 ProSiteProfiles Response regulatory domain profile. 23 138 IPR001789 GO:0000160
Vvi16g0794 592 NCBIfam myb-like DNA-binding domain, SHAQKYF class 212 264 IPR006447 GO:0003677
Vvi16g0794 592 PANTHER TWO-COMPONENT RESPONSE REGULATOR 23 371 IPR045279 GO:0009736
Vvi16g0794 592 FunFam Two-component response regulator 208 270 - -
Vvi16g0794 592 SMART REC_2 22 134 IPR001789 GO:0000160
Vvi16g0794 592 Pfam Response regulator receiver domain 24 132 IPR001789 GO:0000160
Vvi16g0794 592 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 208 267 IPR017930 -
Vvi16g0794 592 MobiDBLite consensus disorder prediction 144 210 - -
Vvi16g0794 592 Gene3D - 22 150 - -
Vvi16g0794 592 SUPERFAMILY Homeodomain-like 209 268 IPR009057 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0794 Vvi-Chr16 15857462 15861283 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0794 57 296 Response Regulator Gene Family AT3G16857 42.460 8.27e-55 194
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GARP-ARR-B Vvi16g0794 Response_reg 2.4e-21 CL0304
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0794 - K14491 vvi:104882154 1122.84