Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0792 ATGGAAGAACCTCGTGCTAACGTGCGCCCAAGTGACCAACCACCTCCTACTCCAAAAATCGAAGTACCCGACTCTTCTCTCTCTATTGTGCCCCCACAAGACCTTTCTTCACCTCCTTCACATTCCTCCTCAACGCCCACATCTGCTCATCCCTCACCAAAAAATCTTCCCTCTCCGACTCCCTTTTCTGGTCAAACCGCCGGGAGGCACCCTTTTTATAGGGGAATCCGGTGTCGAGGTAATAAATGGGTATCGGAGATTCGAGAGCCGCGCAAAACTACTCGAATATGGCTCGGCACGTACCCGACGCCTGAAATGGCGGCTACCGCCTATGATGTAGCAGCGCTGGCCTTAAAAGGCACTGATGCCACCTTGAATTTTCCCAACTCCGTTCTGTCATACCCTATCCCAAAGTCCACCTCCGCAAGCGATATACGCGCGGCGGCAGCGAGGGCCGCTGAGGCTCAGCAAGCAAAGCCCGAGAGTTCGGAGAGCCCAAACACCACCCAACCTAAAAAGGAGGAGACAACAGAATCCAGTAGCTTGGCAGCGGGGGAGGATCAATTCATTGACGAAGAGGAGCTTCTGAACATGCCTAATCTATTGGTGGACATGGCCGAGGGAATGCTGGTTAGCCCGCCTAGACTCAAGTCCCAACCCTCCGACGATTCCCCGGAGAATTCAGACAGTGATAGTCTATGGAGCTACACATAA 714 0.5336 MEEPRANVRPSDQPPPTPKIEVPDSSLSIVPPQDLSSPPSHSSSTPTSAHPSPKNLPSPTPFSGQTAGRHPFYRGIRCRGNKWVSEIREPRKTTRIWLGTYPTPEMAATAYDVAALALKGTDATLNFPNSVLSYPIPKSTSASDIRAAAARAAEAQQAKPESSESPNTTQPKKEETTESSSLAAGEDQFIDEEELLNMPNLLVDMAEGMLVSPPRLKSQPSDDSPENSDSDSLWSYT* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0792 237 ProSiteProfiles AP2/ERF domain profile. 72 128 IPR001471 GO:0003700|GO:0006355
Vvi16g0792 237 CDD AP2 73 130 IPR001471 GO:0003700|GO:0006355
Vvi16g0792 237 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 39 236 IPR045277 GO:0003700
Vvi16g0792 237 MobiDBLite consensus disorder prediction 145 195 - -
Vvi16g0792 237 MobiDBLite consensus disorder prediction 158 184 - -
Vvi16g0792 237 SMART rav1_2 72 134 IPR001471 GO:0003700|GO:0006355
Vvi16g0792 237 MobiDBLite consensus disorder prediction 212 237 - -
Vvi16g0792 237 Gene3D AP2/ERF domain 72 130 IPR036955 GO:0003700|GO:0006355
Vvi16g0792 237 MobiDBLite consensus disorder prediction 1 73 - -
Vvi16g0792 237 SUPERFAMILY DNA-binding domain 72 130 IPR016177 GO:0003677
Vvi16g0792 237 MobiDBLite consensus disorder prediction 29 51 - -
Vvi16g0792 237 Pfam AP2 domain 73 120 IPR001471 GO:0003700|GO:0006355
Vvi16g0792 237 MobiDBLite consensus disorder prediction 217 237 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0792 Vvi-Chr16 15838138 15838851 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0792 67 236 AP2-EREBP Transcription Factor Family AT5G52020 61.850 1.62e-61 191
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0792 AP2 1.2e-09 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0792 - - vvi:100250412 430.639