Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0790 ATGAATACTACTTCTCCACCATATTCCGACCCTCACCCGCTCGTATGCAATTGGGATTCCCTGAATTTGCCTGATTCTGATGGAGGCAGCGAAGAGTTGATGCTGGCCTCCACACACCCGAAGAAGCGGGCTGGGAGGAAGAAGTTTCGGGAGACGCGGCACCCTGTGTACCGCGGCGTGCGGCGGAGGAACTCCGGGAAGTGGGTATGCGAGGTGAGGGAGCCCAACAAGACGTCCAGGATATGGCTGGGGACGTTTCCGACGGCGGAGATGGCTGCGCGCGCGCACGACGTGGCGGCATTGGCGCTGAGGGGACGTGGGGCTTGCCTCAATTTTGCGGACTCTGCGTGGCGGCTGCATGTGCCTAGCTCCCGCGACGCCAAGGACATTCAGAAGGCGGCAGCGGAGGCGGCGGAGGCGTTTAGGCCAATGGAGAATGATGGGGTTATGCAAGATGAGAGGAGGGAAGAGAGTGAGGTGAGGACGCCGGATAATGTGTTTGTTATGGATGAGGAGGACGTTTTTGGAATGCCGGGTCTGCTGGTGAATATGGCTGAGGGTCTGCTGATGCCTCCGCCGCATAGCGTGGCGGATGGCTACGGTGGAGATGACATGGCGGCGGATGCTGACATGTCGTTATGGAGTTACTCTATTTAG 657 0.589 MNTTSPPYSDPHPLVCNWDSLNLPDSDGGSEELMLASTHPKKRAGRKKFRETRHPVYRGVRRRNSGKWVCEVREPNKTSRIWLGTFPTAEMAARAHDVAALALRGRGACLNFADSAWRLHVPSSRDAKDIQKAAAEAAEAFRPMENDGVMQDERREESEVRTPDNVFVMDEEDVFGMPGLLVNMAEGLLMPPPHSVADGYGGDDMAADADMSLWSYSI* 219
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0790 218 Pfam AP2 domain 55 105 IPR001471 GO:0003700|GO:0006355
Vvi16g0790 218 PANTHER DEHYDRATION-RESPONSIVE ELEMENT-BINDING PROTEIN 1D 29 216 IPR045277 GO:0003700
Vvi16g0790 218 Gene3D AP2/ERF domain 56 114 IPR036955 GO:0003700|GO:0006355
Vvi16g0790 218 PRINTS Ethylene responsive element binding protein signature 57 68 IPR001471 GO:0003700|GO:0006355
Vvi16g0790 218 PRINTS Ethylene responsive element binding protein signature 79 95 IPR001471 GO:0003700|GO:0006355
Vvi16g0790 218 FunFam Ethylene-responsive transcription factor 2 55 114 - -
Vvi16g0790 218 MobiDBLite consensus disorder prediction 142 164 - -
Vvi16g0790 218 CDD AP2 57 115 IPR001471 GO:0003700|GO:0006355
Vvi16g0790 218 SMART rav1_2 56 119 IPR001471 GO:0003700|GO:0006355
Vvi16g0790 218 MobiDBLite consensus disorder prediction 146 164 - -
Vvi16g0790 218 ProSiteProfiles AP2/ERF domain profile. 56 113 IPR001471 GO:0003700|GO:0006355
Vvi16g0790 218 SUPERFAMILY DNA-binding domain 56 115 IPR016177 GO:0003677
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0790 Vvi-Chr16 15814174 15814830 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0790 24 216 AP2-EREBP Transcription Factor Family AT5G51990 59.135 3.43e-77 229
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vvi16g0790 AP2 1.9e-15 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0790 - K09286 vvi:100245286 409.453