Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0787 ATGGCCTCTGCAACTCTCCCACTCCCTCTCCGGTCACACCTCACTCGCCTCAAACCCCCTATCAGCCACGCGCCAAGAGCCCTCGCCTGTCACGTCAAACTCTCCCACAGCCACTCCAACCCTTTCCCGCCATTTTCACTTCTTCGAAGCAGATCAAAAGGCGTCGTGAGGCCCCCTTCTGCCTACGTATCGGGTCCTGCTTCCGACCCGATAATCACCGAGCCGGACCCCAAGGTGGAGAGTTCGAACGATGCTCATGATGAAACTGTTGAGCCGCCGAGTGCGATCAGTTCGAGTCTCTTGTGGAGTCTCCTGATGCGGTACAAGCTGAGACTCGCTGTTTCGGCCGTCACTCTCATTGGTTGCTCCGCTTGTACTCTCTCAATGCCTCTATTTTCAGGGAGATTTTTTGAAGTACTTATAGGCACTAGACCAGAACCTCTGTGGAGACTGCTTAGTACTGTTGGAGTGCTGTATACATTGGAGCCAGTTTTAACTATTATTTATGTTGTAAACATGAATACTATTTGGGAGAAGGTTATGTCAACCTTACGCGCTCAGATTTTTAGAAGACTATTGATTCAGAAGGTGGAGTTTTTTGACCGATACAAGGTTGGCGAACTCACTGCTTTGTTAACATCTGACTTGGGTTCTCTTAAAGATATTGTGAGTGAAAACATTTCAAGGGATCGTGGATTCAGGGCACTTTCTGAGGTCATTGGCACAATATGCATCCTGTTCACTTTAGCCCCCCAACTTGCACCAATTTTGGGCATACTGATGCTTACTGTATCTGTTTTAGTTGCTGTATACAAGCGGTCAACTGTGCCTGTTTTTAAAGCTCATGGATTGGCCCAAGCTTCCATATCAGATTGTGCAACAGAAACATTTTCTGCAATTCGTACTGTAAGATCCTTTAGTGGCGAAAAGCGTCAAATGTCTATGTTTGGTAGTCAGGTTATGGCTTTTCAGAGTAGTGGTATAAAGCTTGGGACCTTCAAATCTCTTAATGAATCACTGACTAGAGTTGCCGTCTATATTTCTTTGATGTCCTTGTATTGTCTTGGTGGAAGCAAAGTAAAAGCGGGTGAACTCTCTGTTGGAACCATTGCTTCTTTTATTGGATACACTTTCACATTAACTTTTGCTGTTCAAGGGCTGGTTAATACATTTGGAGATCTTCGTGGAAGTCTTGCTGCTGTTGAGAGGATTAATTCTGTGTTTTCTGGGGGACAAATTGATGAGGCCCTTGCCTATGGTTTAGAAAGAGACATCCGGAGAAAAGAAGTGGATGATGAAAAACTTGGATTATTCTTTGTCAATGGTTTTGAAGAAAAAAACATATTTCCAAATATTCATTACATGTCAGCCTTGAGATCAGCTAGCAATGTGCATAGCCTAGCTTGGTCTGGTGATGTTTGTCTTGAAGATGTGCATTTTTCTTACCCTTTGAGGCCTGATGTGGAAATCCTAAATGGTCTTAATCTAAGGCTAAAATGTGGAACTGTAACTGCTCTAGTTGGCTCAAGTGGTGCTGGGAAAAGTACAATAGTACAGCTATTGGCACGTTTTTATGAGCCAAGCAGGGGCTGCATAACAGTTTCCGGAGAGGATGTTCGAACATTTGACAAGAGCGAATGGGCTCGGGTTGTCTCTATAGTAAACCAAGAACCTGTTCTATTCTCGGTGTCTGTTGGAGAAAATATTGCCTATGGGCTTCCAGACAATAATGTATCCAAGGATGATGTGATAAAGGCAGCCAAAGCTGCTAATGCTCATGATTTCATAATTTCTCTTCCTCAGGGTTATGACACTCTAGTTGGTGAGCGTGGAGGTCTACTGAGTGGAGGACAACGGCAGAGAATTGCCATTGCAAGAGCTCTTCTCAAGAATGCCCCAATCCTAATACTTGATGAGGCGACAAGTGCCTTGGATGCAATCAGTGAGCGCCTGGTTCAAGATGCTCTGAGCCATCTGATGAAAGGAAGGACAACATTAGTGATTGCACACAAGTTAAGTACAGTTCAGAATGCAGACCAGATAGCTCTTTGTTCCAGTGGAAGGATTGCAGAGCTTGGGAGTCACTTTGAGTTATTGGCTAAGAAGGGCCAATATGCTTCATTAGTTGGCACTCAGAGACTTGCTTTTGAGTGA 2154 0.4443 MASATLPLPLRSHLTRLKPPISHAPRALACHVKLSHSHSNPFPPFSLLRSRSKGVVRPPSAYVSGPASDPIITEPDPKVESSNDAHDETVEPPSAISSSLLWSLLMRYKLRLAVSAVTLIGCSACTLSMPLFSGRFFEVLIGTRPEPLWRLLSTVGVLYTLEPVLTIIYVVNMNTIWEKVMSTLRAQIFRRLLIQKVEFFDRYKVGELTALLTSDLGSLKDIVSENISRDRGFRALSEVIGTICILFTLAPQLAPILGILMLTVSVLVAVYKRSTVPVFKAHGLAQASISDCATETFSAIRTVRSFSGEKRQMSMFGSQVMAFQSSGIKLGTFKSLNESLTRVAVYISLMSLYCLGGSKVKAGELSVGTIASFIGYTFTLTFAVQGLVNTFGDLRGSLAAVERINSVFSGGQIDEALAYGLERDIRRKEVDDEKLGLFFVNGFEEKNIFPNIHYMSALRSASNVHSLAWSGDVCLEDVHFSYPLRPDVEILNGLNLRLKCGTVTALVGSSGAGKSTIVQLLARFYEPSRGCITVSGEDVRTFDKSEWARVVSIVNQEPVLFSVSVGENIAYGLPDNNVSKDDVIKAAKAANAHDFIISLPQGYDTLVGERGGLLSGGQRQRIAIARALLKNAPILILDEATSALDAISERLVQDALSHLMKGRTTLVIAHKLSTVQNADQIALCSSGRIAELGSHFELLAKKGQYASLVGTQRLAFE* 718
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0787 717 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 113 396 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g0787 717 SMART AAA_5 500 695 IPR003593 GO:0016887
Vvi16g0787 717 MobiDBLite consensus disorder prediction 58 92 - -
Vvi16g0787 717 Pfam ABC transporter 491 642 IPR003439 GO:0005524
Vvi16g0787 717 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 473 711 IPR003439 GO:0005524
Vvi16g0787 717 SUPERFAMILY ABC transporter transmembrane region 101 404 IPR036640 GO:0005524|GO:0016020
Vvi16g0787 717 PANTHER ATP-DEPENDENT PERMEASE MDL1, MITOCHONDRIAL 88 715 IPR039421 -
Vvi16g0787 717 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 464 712 IPR027417 -
Vvi16g0787 717 Gene3D ABC transporter type 1, transmembrane domain 81 409 IPR036640 GO:0005524|GO:0016020
Vvi16g0787 717 ProSitePatterns ABC transporters family signature. 614 628 IPR017871 GO:0005524|GO:0016887
Vvi16g0787 717 Gene3D ABC transporter type 1, transmembrane domain 456 470 IPR036640 GO:0005524|GO:0016020
Vvi16g0787 717 Pfam ABC transporter transmembrane region 114 383 IPR011527 GO:0005524|GO:0016020|GO:0055085|GO:0140359
Vvi16g0787 717 CDD ABC_6TM_TAP_ABCB8_10_like 117 404 - -
Vvi16g0787 717 CDD ABC_MTABC3_MDL1_MDL2 475 712 - -
Vvi16g0787 717 Gene3D - 471 714 IPR027417 -
Vvi16g0787 717 FunFam ATP-binding cassette sub-family B member 8, mitochondrial 471 715 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0787 Vvi-Chr16 15738110 15750200 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0787 460 717 Calmodulin-binding Proteins AT2G36910 53.257 5.90e-75 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0787 K05657 - vvi:100262436 1357.81