Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0786 ATGTTTTTCTTTCTGCGAAAATCACTGACGTATATCTTTTGTTTCTGTTTTGGTAAGAGAGAGAGAGAGAGGGGGGAACAGAGTGGGGAGAGACCAGGAGAGCCCCACAGAGAGGCCCTTTGGTTGGAGGGCTTGGGCTACTCCTCCAACGGACTTCTCATTCTTCGTCGTCTTCTTCTTTTTCTAATTCTTCTCTTCTGTGTCGCTCTCTCTGTCTCTCAAGATCCTGGTGATTCAGCTGAGATCAAAGAAATTTGGGGTTCAGGGTGCTGGAAATTTGGTATGGCTGTTGCCAAGAGCAACAGCAGCAGTGAATCATCGACCAAAGCCCCTCATTGTTACAAAGTTGAAAGCTTGAAGGAAACCATATTGGACACAGACCAGACCTCAAATTTGAAAGACCGATTTGTTCTTGGGGAGCAGTTGGGTTGGGGACAGTTTGGTGTTATTAGGGCTTGCTCTGATAAGTTAGCTGGAGAGGTGTTGGCATGCAAGTCAATTGCCAAAGACAGGTTGGTCACTCAGGATGATGTGCGGAGTGTGAAACTTGAGATTGAAATAATGACCAAGTTATCGGGGCACCCAAATGTTGTGGATCTCAAAGCAGTTTATGAGGAGGAAGATTATGTTCATTTGGTGATGGAGCTTTGTGCTGGTGGAGAACTCTTTCACCAGTTAGAGAAGCATGGAAGGTTCTCTGAAGCCGAGGCTAGGGTTCTCTTTAGGCATCTGATGGAAGTGGTGATGTATTGCCATGACAAAGGTATTGTTCATAGAGATCTGAAGCCTGAGAACATCCTCTTGGCCACAAAAGCATCATCCTCACCAATTAAATTGGCTGATTTTGGTCTTGCAACCTACATCAAGCCTGGGCAGAGTTTGTATGGGACTGTTGGGAGTCCATTTTACATAGCTCCTGAGGTACTGGCAGGGGGTTATAACCAGGCTGCCGATGTATGGAGCGCCGGAGTTATTCTCTATATTCTTCTTAGTGGGATGCCGCCATTTTGGGGAAAGACTAAGTCAAGGATATTTGATGCTGTTAGGGCAGCTGATCTACGGTTTCCATCTGATCCTTGGGACCAGCTATCTGGTTCTGCTGAGGAATTAATTAGGGGAATGCTCTGTAGGGATCCTTCTCAAAGGCTCACAGCTCAGGAGGTTCTAGATCACTCATGGATTAGGGACCATGCACAATCTTCTGAGGAACCACGTGAACATGAAAACCAAAGTTATGAACACTTGGGTGAAGGCGGAAGCTCTTTCTCTACTTTTATGACTAGGAATCAGGACATCAGCTTTGGCACTGGACCACGTGTTATTTGTGATGCCCAGTCACCTCAATTCACATGCAGATCATCCTTTACTTCCTTTGGGTTGGAACCATCAACACCTTGCTTTGCATCTGGTGGGTTTTCTTTTGGCAGCACTGATGAGCCCAACACCTTGGAATTCTCATCTCCTGTTCCCTCAATGCCAAGCTTCGCATTCTTCAGCCCTTGCCCCATCACCGTGCAAGAGAGTTATACATTGGATCTTTCAGCCAACATATCCACTGTAAATGCAATTCAGAAAGAGGCAAGCTTAGGAAGGCTGTTTATGTTGTCAGATTCTTCTGTTTGCCTTGGGCATGAAGCAAAAGACATTCATTACAAGACAGCTGAAGTGAAGAGGACTGGAGGAACATCTGGGTATAGGATGTCGGGCATTCACAAGAGGAACAGAACAATTGGCCTTGGTGAATTTGATCAGCTTGATTTAGTGGTAACTGAATCAGTGATTCGTTGGGCATCATGCACACATCTCCCCACTGCATCATCACTTAGATCTTCTCTCGTCTGTTGA 1845 0.458 MFFFLRKSLTYIFCFCFGKRERERGEQSGERPGEPHREALWLEGLGYSSNGLLILRRLLLFLILLFCVALSVSQDPGDSAEIKEIWGSGCWKFGMAVAKSNSSSESSTKAPHCYKVESLKETILDTDQTSNLKDRFVLGEQLGWGQFGVIRACSDKLAGEVLACKSIAKDRLVTQDDVRSVKLEIEIMTKLSGHPNVVDLKAVYEEEDYVHLVMELCAGGELFHQLEKHGRFSEAEARVLFRHLMEVVMYCHDKGIVHRDLKPENILLATKASSSPIKLADFGLATYIKPGQSLYGTVGSPFYIAPEVLAGGYNQAADVWSAGVILYILLSGMPPFWGKTKSRIFDAVRAADLRFPSDPWDQLSGSAEELIRGMLCRDPSQRLTAQEVLDHSWIRDHAQSSEEPREHENQSYEHLGEGGSSFSTFMTRNQDISFGTGPRVICDAQSPQFTCRSSFTSFGLEPSTPCFASGGFSFGSTDEPNTLEFSSPVPSMPSFAFFSPCPITVQESYTLDLSANISTVNAIQKEASLGRLFMLSDSSVCLGHEAKDIHYKTAEVKRTGGTSGYRMSGIHKRNRTIGLGEFDQLDLVVTESVIRWASCTHLPTASSLRSSLVC* 615
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0786 614 FunFam Calcium-dependent protein kinase 1 138 221 - -
Vvi16g0786 614 PANTHER SERINE/THREONINE-PROTEIN KINASE 121 405 - -
Vvi16g0786 614 CDD STKc_CAMK 135 393 - -
Vvi16g0786 614 FunFam Phosphoenolpyruvate carboxylase kinase 223 410 - -
Vvi16g0786 614 ProSiteProfiles Protein kinase domain profile. 136 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0786 614 Pfam Protein kinase domain 138 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0786 614 SUPERFAMILY Protein kinase-like (PK-like) 134 470 IPR011009 -
Vvi16g0786 614 Gene3D Transferase(Phosphotransferase) domain 1 223 425 - -
Vvi16g0786 614 ProSitePatterns Serine/Threonine protein kinases active-site signature. 256 268 IPR008271 GO:0004672|GO:0006468
Vvi16g0786 614 SMART serkin_6 136 394 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0786 614 Gene3D Phosphorylase Kinase; domain 1 137 222 - -
Vvi16g0786 614 ProSitePatterns Protein kinases ATP-binding region signature. 142 169 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0786 Vvi-Chr16 15729271 15733541 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0786 121 404 EF-hand Containing Proteins AT2G35890 50.704 2.66e-95 300
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK CAMK_CDPK Vvi16g0786 Pkinase 8.8e-71 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0786 - - vvi:100257321 1039.64