Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0784 ATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGAGCTTCGAATGATAGTGGCAAACAACATAAGGTTTGTTACCATTGGAGGGCAGGCAGGTGCAACAAGTTCCCTTGTCCGTACCTACACAGAGAATTACCAGCTCCTCCTCCCCAACAACACCAACCATTCATAAGCAATGGATCATCGTCCAAACGGCCAAATCAAGGAGTACATGACGATCGCAGCTTTTCTGGTGCACGAAGAAGTCCTAATTTTAATCCTACGTGGGGGCGAGTTCATGGCGCTGGTGCAGGCAATAGAGCTCAAGGTAGTGGCGCGGGCAATAGAGTATTTAGGAAAATTGAGAAGCTTTGTAATTATTGGCTTCAAGGAAATTGTAGTTATGGGGAAAAGTGCAAGTTTTTGCATTCTTGGAGTGTTGGTGATTGTTTCTCGAGTTTGACACAGCTTGAAGGGCATCAGAAGGTTGTCAGTGGGATTGCTTTGCCATCCGGGTCTGATAAGCTATATACTGGGAGCAAAGATGAAACTGTGAGGATTTGGGACTGTCAATCTGGTCAGTGCACTGGTGTGGTTAATCTTGGTGGAGAAGTTGGCTGTATGATTAGTGAGGGCCCATGGTTGTTTGTGGGTATACCAAATGTTGTTAAGGCATGGCACACTCAAAATAACACTGAATTGAGTCTCAGTGGACCCACTGGACAAGTTTATGCATTGGTTGTTGGTAATGATCTGCTCTTTGCTGGTGTACAGGATGGAGCAATACTGGCATGGAAATTTAATGCAGTTTCCAACTGCTTTGAACCAGCTGCCTCACTCAAAGGTCACACTCAATCAGTGATCACGCTAGTTGTTGGAGCTAACAGGCTCTACTCTGGTTCCATGGACCGTTCTATAAGAGTCTGGAACCTTGAAAATTTGCAGTGTCTGCAGACGTTGACTGAACATACTTCAGTTGTAATGTCTCTTCTTTGCTGGGACCAGTTTCTTTTATCTTGTTCGCTTGATGGAACTGTAAAGGTTTGGGTTGCAACAGAAAGTGGAAATTTGGAAGTAACATACACCCACAATGAAGAACAGGGTGTTCTCTACCTCTGCGGAATGCATGATCCAGAAGCCAAGCCAGTCCTTCTGTGCTCTTGCAATGACAACACTGTCCGCGTTTACGACTTGCCATCATTTTCTGAAAGGGGGAAGATATTTGCAAGGGAGGGGATCAGAGCAATTCAGATAGGACCAGGTGGTCTTTTCTTTACTGGCGATGGAAGTGGTCAAGTGAGAGTATGGAATTGGTCGACTGAGGCCGCGGCTCCTGCTTGA 1329 0.4575 MDVDEHGNKRVFQRLGASNDSGKQHKVCYHWRAGRCNKFPCPYLHRELPAPPPQQHQPFISNGSSSKRPNQGVHDDRSFSGARRSPNFNPTWGRVHGAGAGNRAQGSGAGNRVFRKIEKLCNYWLQGNCSYGEKCKFLHSWSVGDCFSSLTQLEGHQKVVSGIALPSGSDKLYTGSKDETVRIWDCQSGQCTGVVNLGGEVGCMISEGPWLFVGIPNVVKAWHTQNNTELSLSGPTGQVYALVVGNDLLFAGVQDGAILAWKFNAVSNCFEPAASLKGHTQSVITLVVGANRLYSGSMDRSIRVWNLENLQCLQTLTEHTSVVMSLLCWDQFLLSCSLDGTVKVWVATESGNLEVTYTHNEEQGVLYLCGMHDPEAKPVLLCSCNDNTVRVYDLPSFSERGKIFAREGIRAIQIGPGGLFFTGDGSGQVRVWNWSTEAAAPA* 443
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0784 442 ProSiteProfiles Zinc finger C3H1-type profile. 115 142 IPR000571 GO:0046872
Vvi16g0784 442 Gene3D - 140 290 IPR015943 GO:0005515
Vvi16g0784 442 PANTHER - 34 441 IPR044715 -
Vvi16g0784 442 PRINTS G protein beta WD-40 repeat signature 293 307 IPR020472 -
Vvi16g0784 442 PRINTS G protein beta WD-40 repeat signature 333 347 IPR020472 -
Vvi16g0784 442 PRINTS G protein beta WD-40 repeat signature 172 186 IPR020472 -
Vvi16g0784 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 276 309 - -
Vvi16g0784 442 FunFam Zinc finger CCCH domain-containing protein 48 233 441 - -
Vvi16g0784 442 ProSitePatterns Trp-Asp (WD) repeats signature. 293 307 IPR019775 -
Vvi16g0784 442 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Vvi16g0784 442 SMART c3hfinal6 117 141 IPR000571 GO:0046872
Vvi16g0784 442 MobiDBLite consensus disorder prediction 47 108 - -
Vvi16g0784 442 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Vvi16g0784 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 153 194 IPR001680 GO:0005515
Vvi16g0784 442 ProSiteProfiles Trp-Asp (WD) repeats profile. 276 315 IPR001680 GO:0005515
Vvi16g0784 442 SUPERFAMILY WD40 repeat-like 150 436 IPR036322 GO:0005515
Vvi16g0784 442 SUPERFAMILY CCCH zinc finger 116 140 IPR036855 GO:0046872
Vvi16g0784 442 Gene3D - 117 139 - -
Vvi16g0784 442 SMART WD40_4 269 306 IPR001680 GO:0005515
Vvi16g0784 442 SMART WD40_4 309 346 IPR001680 GO:0005515
Vvi16g0784 442 SMART WD40_4 396 433 IPR001680 GO:0005515
Vvi16g0784 442 SMART WD40_4 146 185 IPR001680 GO:0005515
Vvi16g0784 442 SMART WD40_4 225 262 IPR001680 GO:0005515
Vvi16g0784 442 SMART WD40_4 350 393 IPR001680 GO:0005515
Vvi16g0784 442 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 119 140 IPR000571 GO:0046872
Vvi16g0784 442 ProSiteProfiles Trp-Asp (WD) repeats circular profile. 153 185 - -
Vvi16g0784 442 FunFam Zinc finger CCCH domain-containing protein 48 141 231 - -
Vvi16g0784 442 Gene3D - 291 441 IPR015943 GO:0005515
Vvi16g0784 442 Pfam WD domain, G-beta repeat 150 185 IPR001680 GO:0005515
Vvi16g0784 442 Pfam WD domain, G-beta repeat 273 306 IPR001680 GO:0005515
Vvi16g0784 442 Pfam WD domain, G-beta repeat 311 345 IPR001680 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0784 Vvi-Chr16 15715496 15722715 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0784 292 438 Acyl Lipid Metabolism Gene Families AT3G18860 26.452 5.87e-06 47.0
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi16g0784 WD40 0.001 CL0186
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0784 - - vvi:100252191 934.865