Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0782 ATGGGAAAAGGAGGGATGTCTCAGGGCGGAGATGGAAGAGGTGAAGGAGAAGAGAACATGGCAGCATGGCTTCTTGGGGTTAACAACCTCAAGATCCAACCTTTCATCCTCCCTCCTCTTGGTCCTCATGATGTTAGAGTTAGGATGAAGGCTGTTGGTATATGTGGAAGTGATGTTCACTACCTCAAGAAATTGAGATGTGCAGATTTTATTGTTAAAGAGCCTATGGTGATCGGCCATGAATGTGCTGGGATCATTGATGAAGTTGGTCCCCAGGTGAAGTCTCTGGTGCCAGGGGATCGAGTGGCATTGGAGCCTGGAATCAGTTGCTGGCGATGCCAACTCTGCAAAGAAGGCCGATACAATCTGTGCCCTGAGATGAAATTTTTTGCTACACCTCCTGTTCATGGTTCTCTTGCCAATCAGGTTGTGCATCCTGCAGATCTATGCTTTAAACTGCCAGACAATGTGAGCTTGGAGGAAGGGGCAATGTGTGAGCCATTAAGTGTTGGTGTTCATGCTTGTCGCCGTGCTGATATAGGTCCAGAGTCGAATGTATTGGTCATGGGTGCAGGGCCAATTGGGCTTGTTACAATGCTTGCAGCTCGTGCTTTTGGAGCACCCAGAATTGTCATTGTGGATGTGGACGATTACCGGTTATCTGTTGCAAAGGATCTTGGTGCAGATGAGATTGTTAAAGTTTCGACAAATATTCAGGATGTAGCTGAAGAAGTGGTGCAGATACATAAAGCTATGGGAGCTAGAGTGGATGTGAGCTTTGATTGTGCCGGCTTTGATAAAACCATGTCAACCGCTCTAAGTGCCACTTCTACTGGTGGCAAAGTTTGTCTTGTGGGGATGGGGCACAATGAAATGACGGTTCCGCTTACTCCTGCTGCTGCAAGGGAAGTTGATGTGGTTGGTGTGTTCCGGTACAAGAACACATGGCCGATATGCATCGAGTTCCTGAGGAGTGTGAAGATCGACGTGAAGCCCCTGATAACACATAGGTTCGGCTTCTCCCAAAGGGAGGTAGAAGAAGCCTTTGAAACCAGTGCTCGTGGTGGTACTGCCATTAAGGTCATGTTCAACCTCTAG 1098 0.4791 MGKGGMSQGGDGRGEGEENMAAWLLGVNNLKIQPFILPPLGPHDVRVRMKAVGICGSDVHYLKKLRCADFIVKEPMVIGHECAGIIDEVGPQVKSLVPGDRVALEPGISCWRCQLCKEGRYNLCPEMKFFATPPVHGSLANQVVHPADLCFKLPDNVSLEEGAMCEPLSVGVHACRRADIGPESNVLVMGAGPIGLVTMLAARAFGAPRIVIVDVDDYRLSVAKDLGADEIVKVSTNIQDVAEEVVQIHKAMGARVDVSFDCAGFDKTMSTALSATSTGGKVCLVGMGHNEMTVPLTPAAAREVDVVGVFRYKNTWPICIEFLRSVKIDVKPLITHRFGFSQREVEEAFETSARGGTAIKVMFNL* 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0782 365 PANTHER SORBITOL DEHYDROGENASE 18 365 - -
Vvi16g0782 365 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 156 328 IPR036291 -
Vvi16g0782 365 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 79 93 IPR002328 GO:0008270|GO:0016491
Vvi16g0782 365 Gene3D - 170 310 - -
Vvi16g0782 365 Pfam Zinc-binding dehydrogenase 193 322 IPR013149 -
Vvi16g0782 365 CDD sorbitol_DH 21 364 IPR045306 GO:0016616
Vvi16g0782 365 Pfam Alcohol dehydrogenase GroES-like domain 42 153 IPR013154 -
Vvi16g0782 365 FunFam Sorbitol dehydrogenase 170 310 - -
Vvi16g0782 365 Gene3D - 28 352 - -
Vvi16g0782 365 SMART PKS_ER_names_mod 26 363 IPR020843 GO:0016491
Vvi16g0782 365 SUPERFAMILY GroES-like 19 191 IPR011032 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0782 Vvi-Chr16 15675560 15678887 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0782 41 298 Monolignol Biosynthesis Gene Families AT4G37980 28.090 6.82e-17 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0782 K00008 - vvi:100265888 724.546