Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0781 ATGGGGAAAGGAGGCAACTCTGAGGATGCTGTTTCAAGCAAGGAGCATGGAGAAGAGAACATGGCAGCTTGGCTTCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGGCCCCCATGATGTTAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTGATGTTCATCACTTCAAGACAATGAGGTGCGCAAATTTTATTGTGAAGAAGCCAATGGTGATAGGACATGAGTGTGCTGGTATCATAGAAGAAGTTGGGAGTGAAGTGAAGAATCTTGTAGTAGGTGACCGGGTTGCTCTGGAGCCCGGTATTAGCTGTAACCGATGCAGTCTTTGCAGAAATGGTCAATACAATCTATGCAGAGAAATGAAGTTTTTTGGATCTCCTCCAACCAATGGATCTCTAGCTAACCAGGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTGGAGGAAGGAGCAATGTGTGAGCCGCTCAGTGTCGGCATCCATGCTTGTCGTCGTGCTAATGTTGGCCCTGAGACCAACGTACTGATCATGGGATCAGGCCCCATCGGCCTCGTTACAATGCTGGCTGCTCGTGCTTTTGGAGCGCCGAGGATTGTCCTTGTGGATGTAGATGATCAGCGTCTAGCTATTGCAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGGATCTAGACGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTAGACTGTGTTGGCTTCAACAAAACCATGTCAACAGCTTTGAACGCGACTCGAGCAGGCGGCAAAGTTTGCCTTGTGGGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGGGAGGTCGATATCGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGCCTTGAGTTTTTGAGGAGTGGCAAGATTGATGTTAAACCCCTGATAACCCACAGGTTTACTTTCTCACAGAAGGACGTGGAAGAAGCCTTTGAAACCAGTGCTCGTGGGGGTAATGCCATCAAGATGGGGAAAGGAGGCAATTCTGAGGATGCTGTTTCAGGCAAGGAGCATGGAGAGGAGAACATGGCAGCTTGGCTTCTGGGCATCAAGACCCTCAAGATTCAACCCTACATTCTCCCTTCTCTGGGCCCTTATGATGTCAAAGTTAGGATCAAAGCTGTAGGGATATGTGGAAGTGATGTTCATCACTTCAAGACAATGAGGTGCGCAAATTTCATTGTGAAGAAGCCAATGGTGATAGGGCATGAGTGTGCTGGCATCATAGAAGAAGTTGGGAGTGAAGTGAAGAATCTTGTAGCAGGTGACCGGGTTGCTCTGGAGCCCGGTATTAGCTGCAACCGATGCAGTCTTTGCAGGAATGGTCAATACAATCTATGCAGAGAAATGAAGTTTTTTGGATCTCCTCCAACCAATGGTTCTCTAGCTAACCAGGTGGTCCATCCTTCAAATCTTTGTTTCAAGCTACCTGACAATGTGAGCTTGGAGGAAGGAGCAATGTGTGAGCCGCTCAGTGTCGGCATCCATGCTTGTCGCCGTGCTAATGTTGGCCCTGAGACCAACGTACTGATCATGGGATCAGGCCCCATCGGCCTTGTCACAATGCTGGCTGCTCGTGCTTTTGGAGCGCCGAGGATTGTCCTTGTGGACGTAGATGATCAGCGACTAGCTATTGCAAAAGATCTTGGCGCAGACGACATTATCCGGGTTTCAACGAATATTCAGGATCTAGATGAAGAAGTGGCAAAAATACAAAGCACAATGGTTACTGGAGTTGATGTGAGCTTTGATTGCGTCGGCTTCAACAAAACCATGTCAACAGCTTTGAACGCGACTCGAGCAGGCGGTAAAGTTTGCCTTGTGGGTTTGGCCCAGAGTGAGATGACTGTTCCTCTCACTCCAGCTGCTGCCAGGGAGGTCGATATTGTTGGCATATTCCGCTATAGGAACACATGGCCGCTCTGCCTTGAGTTTTTGAGGAGTGGCAAGATTGATGTTAAACCCCTGATAACCCACAGGTTTACTTTCTCACAGAAGGATGTGGAGGAAGCCTTTGAAACCAGTGCTCGTGGGGGTAATGCTATCAAGGTCATGTTTAATCTCTAA 2184 0.4808 MGKGGNSEDAVSSKEHGEENMAAWLLGIKTLKIQPYILPSLGPHDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVVGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQDLDEEVAKIQSTMVTGVDVSLDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSARGGNAIKMGKGGNSEDAVSGKEHGEENMAAWLLGIKTLKIQPYILPSLGPYDVKVRIKAVGICGSDVHHFKTMRCANFIVKKPMVIGHECAGIIEEVGSEVKNLVAGDRVALEPGISCNRCSLCRNGQYNLCREMKFFGSPPTNGSLANQVVHPSNLCFKLPDNVSLEEGAMCEPLSVGIHACRRANVGPETNVLIMGSGPIGLVTMLAARAFGAPRIVLVDVDDQRLAIAKDLGADDIIRVSTNIQDLDEEVAKIQSTMVTGVDVSFDCVGFNKTMSTALNATRAGGKVCLVGLAQSEMTVPLTPAAAREVDIVGIFRYRNTWPLCLEFLRSGKIDVKPLITHRFTFSQKDVEEAFETSARGGNAIKVMFNL* 728
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0781 727 SUPERFAMILY GroES-like 20 191 IPR011032 -
Vvi16g0781 727 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 157 330 IPR036291 -
Vvi16g0781 727 FunFam Sorbitol dehydrogenase 171 311 - -
Vvi16g0781 727 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 518 691 IPR036291 -
Vvi16g0781 727 Pfam Zinc-binding dehydrogenase 555 685 IPR013149 -
Vvi16g0781 727 Pfam Zinc-binding dehydrogenase 194 324 IPR013149 -
Vvi16g0781 727 SUPERFAMILY GroES-like 381 552 IPR011032 -
Vvi16g0781 727 PANTHER SORBITOL DEHYDROGENASE 380 727 - -
Vvi16g0781 727 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 441 455 IPR002328 GO:0008270|GO:0016491
Vvi16g0781 727 Gene3D - 532 672 - -
Vvi16g0781 727 Gene3D - 171 311 - -
Vvi16g0781 727 Gene3D - 30 353 - -
Vvi16g0781 727 SMART PKS_ER_names_mod 27 360 IPR020843 GO:0016491
Vvi16g0781 727 CDD sorbitol_DH 383 726 IPR045306 GO:0016616
Vvi16g0781 727 ProSitePatterns Zinc-containing alcohol dehydrogenases signature. 80 94 IPR002328 GO:0008270|GO:0016491
Vvi16g0781 727 Pfam Alcohol dehydrogenase GroES-like domain 43 154 IPR013154 -
Vvi16g0781 727 Pfam Alcohol dehydrogenase GroES-like domain 406 515 IPR013154 -
Vvi16g0781 727 FunFam Sorbitol dehydrogenase 532 672 - -
Vvi16g0781 727 CDD sorbitol_DH 22 361 IPR045306 GO:0016616
Vvi16g0781 727 Gene3D - 391 714 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0781 Vvi-Chr16 15651701 15666324 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0781 403 660 Monolignol Biosynthesis Gene Families AT4G37980 25.468 8.71e-15 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0781 K00008 K19635 vvi:100232980 729.169