Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0752 ATGGATGTTGACGAGCATGGTAACAAACGGGTGTTTCAACGACTTGGGGCTTCGAATGATAGTGGCAAACAACAAAAGGTTTGTTACCGTTGGAGGGCAGGCAGGTGCAACAAGTTCCCCTGTCCGTACCTACACAGAGAATTACCAGCTCCTCCTCCCGAACAATACCAACCATTCATAAGCAATGGATCATCGTCCAAACGGCCGAATCAAGGAGTACATGACGATCGCAGCTTTTCTGGTGCACGAAGAAGCCCTAATTTAATCCTGCGTGGGGGCGAGTTCATGGCGGTGGTGCAGGCAATAGAGCTCCAGGTAGTGGCGCGGGCAATAGAGATTGAGAAGCTTTGTAATTATTGGCTTCAAGGAAATTGTAGTTATGGGGATAAGTGCAATTTTTTGCATTCTTGGAGTATTGGTGATTGTTTCTCGAGTTTGACACTGCTTGAAGGGCATTAG 459 0.4728 MDVDEHGNKRVFQRLGASNDSGKQQKVCYRWRAGRCNKFPCPYLHRELPAPPPEQYQPFISNGSSSKRPNQGVHDDRSFSGARRSPNLILRGGEFMAVVQAIELQVVARAIEIEKLCNYWLQGNCSYGDKCNFLHSWSIGDCFSSLTLLEGH* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0752 152 Gene3D - 108 144 - -
Vvi16g0752 152 ProSiteProfiles Zinc finger C3H1-type profile. 22 48 IPR000571 GO:0046872
Vvi16g0752 152 Pfam Zinc finger C-x8-C-x5-C-x3-H type (and similar) 115 136 IPR000571 GO:0046872
Vvi16g0752 152 MobiDBLite consensus disorder prediction 52 80 - -
Vvi16g0752 152 SMART c3hfinal6 113 137 IPR000571 GO:0046872
Vvi16g0752 152 SMART c3hfinal6 23 47 IPR000571 GO:0046872
Vvi16g0752 152 ProSiteProfiles Zinc finger C3H1-type profile. 116 138 IPR000571 GO:0046872
Vvi16g0752 152 SUPERFAMILY CCCH zinc finger 114 136 IPR036855 GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0752 Vvi-Chr16 15273136 15273594 Dispersed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C3H Vvi16g0752 zf-CCCH 1.6e-08 CL0537
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0752 - - vvi:100252191 257.299