Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0748 ATGGCGTCGCCCTCGAATCCAAATGAGGAAAACCTTTCAATTGAGAAGCCTACAACATTAGAAATCTCTGCGGCTTTTCCTGCCTCTTCTGATTCCGTTTCCAAGTCATGGGAGGCCGAGGGAGAACAAGAAATATCGATGAAAACAGTGATAGCATTGCCGAAAAAGCGGGCAGTGGATCGACATGTGAAAGTGGAAGGGCGTGGCAGGAGGATCCGGATGTCGTCGGATTCCACAGCGAGACTATTTGAGCTGACAAGGCAGCTAGGCCTCAAATCAGAAGGCGAGACCATCCGTTGGTTGCTGAAAAACGCGGAGGCTGATATTATTAGAGCCACAGGGAGCGGCACTATTCCGGCGATCGCAACATCGGTGGGCGGAACTTTGGTGGTTCCAAGGGTAACAACAGGAGAGGCCGCAGCAACAACATCAAATGCAGGGAGTGGCGAAGGCCTATCAGAATCGTGTGGGTTGGCTCCCATTTATTCTGCTGCACCTCGAGGGCCTTGA 510 0.5196 MASPSNPNEENLSIEKPTTLEISAAFPASSDSVSKSWEAEGEQEISMKTVIALPKKRAVDRHVKVEGRGRRIRMSSDSTARLFELTRQLGLKSEGETIRWLLKNAEADIIRATGSGTIPAIATSVGGTLVVPRVTTGEAAATTSNAGSGEGLSESCGLAPIYSAAPRGP* 170
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0748 169 PANTHER TRANSCRIPTION FACTOR TCP4-RELATED 50 145 IPR005333 GO:0003700
Vvi16g0748 169 Pfam TCP family transcription factor 60 124 IPR017887 -
Vvi16g0748 169 ProSiteProfiles TCP domain profile. 58 112 IPR017887 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0748 Vvi-Chr16 15211547 15212056 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0748 54 161 TCP Transcription Factor Family AT2G45680 52.033 7.44e-33 118
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF TCP Vvi16g0748 TCP 2.8e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0748 - - vvi:104882167 298.13