Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0740 ATGGTGAGAGGGAAGATTCAGATGAGGCGAATTGAGAATGCCACGAGCAGGCAAGTGACCTTCTCGAAACGCCGAAACGGGCTGCTGAAGAAGGCGTATGAGCTATCGGTTCTCTGTGATGCTGAAGTTGCTGTGATCATTTTCTCACAGAAAGGAAGGCTCTACGAGTTTTCCAGTTCCAAGTACGTTTACTAA 195 0.4769 MVRGKIQMRRIENATSRQVTFSKRRNGLLKKAYELSVLCDAEVAVIIFSQKGRLYEFSSSKYVY* 65
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0740 64 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi16g0740 64 Gene3D - 13 63 IPR036879 GO:0003677|GO:0046983
Vvi16g0740 64 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi16g0740 64 SUPERFAMILY SRF-like 3 61 IPR036879 GO:0003677|GO:0046983
Vvi16g0740 64 FunFam MADS-box transcription factor MADS-MC 13 64 - -
Vvi16g0740 64 CDD MADS_MEF2_like 3 60 IPR033896 GO:0000977|GO:0045944
Vvi16g0740 64 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi16g0740 64 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi16g0740 64 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi16g0740 64 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi16g0740 64 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 61 - -
Vvi16g0740 64 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0740 Vvi-Chr16 15032663 15032857 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0740 1 60 MADS-box Gene Family AT5G62165 86.667 6.81e-35 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-M-type Vvi16g0740 SRF-TF 2.8e-28 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0740 - - nsy:104228854 117.472