Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0735 ATGGGGAGAGGGAGAGTGGTGTTGCAGAGGATAGAGAACAAGATCAACCGCCAAGTCACCTTCTCCAAACGGAGAAATGGACTGCTGAAGAAAGCCTACGAGCTTTCTGTGCTCTGCGATGCTGAGGTCTGTCTCATCATCTTCTCTAGCCGTGGGAAGCTTTTCGAGTTCGGAAGCTCTGGCATGACCAAAACCATTGAGCGATACCGAAGATGTTGTTACGCCTCAAGAGATAACAATGACGCTGAGCATGATAGACAGATTGGGCACGAAGAGTATTCGAAGTTAAAGGCCAAATATGAATCTCTTATGGACTCACAGAGGCATTTGCTTGGAGAGGATCTTGGGCTGCTTAGTATCAAAGAGTTGCAAAATCTTGAGAAAATGCTCGAGGGAACTCTCTCTCAAGCAAGGCAACGAAAGGCACAAATGATGTTAAAACAAATGGACGAACTGAAAAAAAAGGAGCATGATCTTGAAGAGATGAATAAACAGCTCACATCGAAGCTTGAGGAACTTGAAGAATGTGTTCGAGTAATTGAAGCTTCATGGGATTCTGGCACAGTAGCTGGCAACGACAGCCTCAACATGCACATCTCTCAACCCAACCAAATTCAACCTCAACCTCAACCCCAACCCCAACCCAGCCTACCAATGGGGTTCCACGAATTTGTTCCACCGGAAGGAGCAGCTATAGCAAGGAATGTAGGCAATGCCCGGAATGGCCTCGCCCAAGGATGGCTTGTTTGA 750 0.4693 MGRGRVVLQRIENKINRQVTFSKRRNGLLKKAYELSVLCDAEVCLIIFSSRGKLFEFGSSGMTKTIERYRRCCYASRDNNDAEHDRQIGHEEYSKLKAKYESLMDSQRHLLGEDLGLLSIKELQNLEKMLEGTLSQARQRKAQMMLKQMDELKKKEHDLEEMNKQLTSKLEELEECVRVIEASWDSGTVAGNDSLNMHISQPNQIQPQPQPQPQPSLPMGFHEFVPPEGAAIARNVGNARNGLAQGWLV* 250
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0735 249 MobiDBLite consensus disorder prediction 196 216 - -
Vvi16g0735 249 SMART madsneu2 1 60 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 ProSiteProfiles MADS-box domain profile. 1 61 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 PRINTS MADS domain signature 3 23 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 PRINTS MADS domain signature 38 59 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 PRINTS MADS domain signature 23 38 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 CDD MADS_MEF2_like 2 78 IPR033896 GO:0000977|GO:0045944
Vvi16g0735 249 Pfam K-box region 83 170 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi16g0735 249 ProSitePatterns MADS-box domain signature. 3 57 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 FunFam MADS-box transcription factor 1 13 86 - -
Vvi16g0735 249 Pfam SRF-type transcription factor (DNA-binding and dimerisation domain) 10 57 IPR002100 GO:0003677|GO:0046983
Vvi16g0735 249 PANTHER SERUM RESPONSE FACTOR HOMOLOG 3 202 - -
Vvi16g0735 249 Coils Coil 120 183 - -
Vvi16g0735 249 Gene3D - 13 99 IPR036879 GO:0003677|GO:0046983
Vvi16g0735 249 ProSiteProfiles K-box domain profile. 86 176 IPR002487 GO:0003700|GO:0005634|GO:0006355
Vvi16g0735 249 SUPERFAMILY SRF-like 2 84 IPR036879 GO:0003677|GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0735 Vvi-Chr16 14940246 14955116 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0735 1 249 MADS-box Gene Family AT2G45650 50.781 4.00e-81 242
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MADS-MIKC Vvi16g0735 K-box 2.1e-24 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0735 K09264 - vvi:100256085 468.774