Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0730 ATGACGTGGACATGTTTTTGCTGCATCTCCCAAGAGCATTCAGAAGCCAGTGTGAAGAATAATAGTAAAGACTATCCATGGGAGATATACTCTCTCAAGGAGCTTCTTCAAGCAACAGATAACTTCCATGAGACCAAGAAGATCGGCGAGGGAGGGTTTGGAAGTGTTTATTGTGGCCGAACAAGTAAAGGCGTCGAGATTGCAGTGAAAAGGCTAAAGGCCATGAGCGCAAAGGCTGAAATGGAATTCGCTGTGGAAGTGGAGATACTTGGAAGAGTGAGGCATAAGAACTTGTTGGGGTTGAGGGGATTCTATGCTGGAGGTGATGAAAGGCTTATTGTCTATGATTTCATGGCTAATCAAAGCTTGATTACCCATCTGCATGGCCAACTTTCTGCAGAATGTTTATTAGATTGGCCAAGAAGGATGAACATCGCACTCGGATCAGCTGAGGGAGTAGCGTATTTGCACCATGAGGCAAATCCTCACATAATACATAGAGACATAAAGGCTAGTAATGTCCTCCTAGATTCCGAATTCCAAGCCAAAGTTGCTGATTTCGGATTTGCCAAGCTCTTGCCAGAAGGGGTCACTCATTTGACCACAAGAGTAAAGGGGACACTAGGCTATTTGGCTCCTGAATATGCAATGTGGGGGAAGGTGTCTGAGAGCTGCGATGTTTACAGCTTTGGAATACTACTTCTAGAGATAATCAGTGCCAAAAAGCCCATAGAAAAACTTCCAGGAGGCGTGAAGCGCGACATCGTTCAATGGGCTACCCCATATGTTCAAAAAGGGGCATATCATCATATCGCCGACCCTAGGTTGAAGGGTAAGTTTGATCGATCTCAACTAAAATTAGCTATCACAGTTGCAATGAAATGTACTGATAACAACCCGGACAACCGCCCCAGCATGATGGAAGTGGTGGGGTGGCTTAAGGGCGATGTAGGGAGGAGGAAAAATGAGGTAATTTATGCTAAGGACGGGGTTGCGAAACATGAAAATAGTGATTATGATGATGATGATGATGATAATGATAAGGATAATGATACTGACTATGAATTAGGGTTTGGAACGACTAAATCCGATATTAGAGTAATACGGCCACGATCAAGAATGAGATGA 1128 0.4397 MTWTCFCCISQEHSEASVKNNSKDYPWEIYSLKELLQATDNFHETKKIGEGGFGSVYCGRTSKGVEIAVKRLKAMSAKAEMEFAVEVEILGRVRHKNLLGLRGFYAGGDERLIVYDFMANQSLITHLHGQLSAECLLDWPRRMNIALGSAEGVAYLHHEANPHIIHRDIKASNVLLDSEFQAKVADFGFAKLLPEGVTHLTTRVKGTLGYLAPEYAMWGKVSESCDVYSFGILLLEIISAKKPIEKLPGGVKRDIVQWATPYVQKGAYHHIADPRLKGKFDRSQLKLAITVAMKCTDNNPDNRPSMMEVVGWLKGDVGRRKNEVIYAKDGVAKHENSDYDDDDDDNDKDNDTDYELGFGTTKSDIRVIRPRSRMR* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0730 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 14 117 - -
Vvi16g0730 375 ProSitePatterns Protein kinases ATP-binding region signature. 48 70 IPR017441 GO:0005524
Vvi16g0730 375 ProSitePatterns Serine/Threonine protein kinases active-site signature. 164 176 IPR008271 GO:0004672|GO:0006468
Vvi16g0730 375 PANTHER PROMASTIGOTE SURFACE ANTIGEN PROTEIN PSA 5 341 - -
Vvi16g0730 375 SUPERFAMILY Protein kinase-like (PK-like) 24 317 IPR011009 -
Vvi16g0730 375 FunFam PTI1-like tyrosine-protein kinase At3g15890 118 328 - -
Vvi16g0730 375 Pfam Protein kinase domain 42 310 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0730 375 MobiDBLite consensus disorder prediction 335 358 - -
Vvi16g0730 375 ProSiteProfiles Protein kinase domain profile. 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0730 375 Gene3D Phosphorylase Kinase; domain 1 5 117 - -
Vvi16g0730 375 Gene3D Transferase(Phosphotransferase) domain 1 118 329 - -
Vvi16g0730 375 SMART serkin_6 42 313 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0730 Vvi-Chr16 14790215 14791748 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0730 30 358 Trihelix Transcription Factor Family AT1G70460 41.194 7.78e-81 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XV Vvi16g0730 Pkinase 1.1e-44 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0730 - - vvi:100261784 748.043