Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0729 ATGGAAAAGAGCCCTAGACAAAAAGTAGTGCTCACTCCGGGCAAAAATACAGAGAATACTAGTAGTAGCAACAAGAAGATCCTGCGAAGAGATATGGAACGACAAAGGCGCCAAGAAATGGCTAATCTGAATGCTTCTCTTCGATCATTGCTTCCACTTGAATATGTCAAGGGAAAACGCTCAATATCTGATCACATGCATGAAGCAGTGAATTACATCAACCACCTGCAAATGAAGATTCAAGATCTGGGTACCAAGAGAGATGAGTTGAGAAATCAGTCTAACATGAGTGCTTGTGATTCAGAGAGTGGAAGCTCCTATAAACGGTCACGACACTGTGTTATAGTCTCCCCATGTATGGACGGTGTAGAGATTTTGATAAGTGGGGGCTTCAAGGAAGGGTTGCTGCTATCAAAAGTGATGGAAGTACTGCTTGAAGAAGGACTAGGTGTTCACAGATGTGTTTCCACCAAAGTAAATGAAGGATTGCTTCACACTATGAATTGCAAGGTCAGCGATCCCACAGGTTTTGACCTATGTGGGCTGCGGCAGAAATTGTGGAATGCTGTAACTCCATCTTCCAGATGA 588 0.4337 MEKSPRQKVVLTPGKNTENTSSSNKKILRRDMERQRRQEMANLNASLRSLLPLEYVKGKRSISDHMHEAVNYINHLQMKIQDLGTKRDELRNQSNMSACDSESGSSYKRSRHCVIVSPCMDGVEILISGGFKEGLLLSKVMEVLLEEGLGVHRCVSTKVNEGLLHTMNCKVSDPTGFDLCGLRQKLWNAVTPSSR* 196
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0729 195 Coils Coil 73 93 - -
Vvi16g0729 195 Pfam Helix-loop-helix DNA-binding domain 26 77 IPR011598 GO:0046983
Vvi16g0729 195 FunFam Transcription factor bHLH126 16 104 - -
Vvi16g0729 195 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 23 95 IPR036638 GO:0046983
Vvi16g0729 195 CDD bHLH_AtORG2_like 25 97 - -
Vvi16g0729 195 Gene3D - 15 102 IPR036638 GO:0046983
Vvi16g0729 195 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 16 187 - -
Vvi16g0729 195 MobiDBLite consensus disorder prediction 1 28 - -
Vvi16g0729 195 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 24 76 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0729 Vvi-Chr16 14776861 14778037 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0729 30 186 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 42.073 2.47e-36 124
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi16g0729 HLH 1.2e-07 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0729 - - vvi:100244647 387.497