Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0728 ATGTTCCCTTTACAACAATGCTATGAGTTGTCTGATGATGAAATCTTCTCTCTTCTCCAGCAACAACATATAAATCAACAAGATCCGAGTCATGCTTCAATGGAGGGAAGTAATCTTCCCAAGAATACGGAAAAGAGCCCTAGAAAAAAGGAATTATTAGCTACTCCAGGCGACAATGATGGCAATACCAGTGGTGGTGACAGGAAGATCATGCGTAGGGACATGGAAAGGCAAAGGCGCCAAGAGATGGCAAATCTGAATGCTTCTCTTCGATCACTACTCCCCATTGAATATATAAAGGGAAAACGTTCAATATCTGATCACATGCATGAAGCTGTGAATTACATAAATGACCTGCAGATGAAGATTCAAGATTTAGGTAACAAGAGAGACGCGTTGAAAAGGCAGTGTAATATGAGCGCTTCTCACTTGGAGAGTAGAAGCTCGGAGATCTGTCCGCCTAACTGTGTTGTGGTCTCCCCATGTTTGGGTGGTGTGGAGATTCTGGTCAGTGGTGGATTCAGAGAGGAAGGGTTACTATCCAGAGTGATGGAATTACTGTTTGAAGAAAGGCTTAGTGTTGTTAGTTGTGTTTCCACCAAAGTAAATGAAGGGTTGCTTCACACCATCAATTGCAAGGTTGCTGATCCCTCATGTGTTGATCTTTCTATGCTGCAGCAGAAACTGTTGGATGCTGCGAATCCATCTTTCTGA 714 0.43 MFPLQQCYELSDDEIFSLLQQQHINQQDPSHASMEGSNLPKNTEKSPRKKELLATPGDNDGNTSGGDRKIMRRDMERQRRQEMANLNASLRSLLPIEYIKGKRSISDHMHEAVNYINDLQMKIQDLGNKRDALKRQCNMSASHLESRSSEICPPNCVVVSPCLGGVEILVSGGFREEGLLSRVMELLFEERLSVVSCVSTKVNEGLLHTINCKVADPSCVDLSMLQQKLLDAANPSF* 238
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0728 237 CDD bHLH_AtORG2_like 68 142 - -
Vvi16g0728 237 Gene3D - 60 148 IPR036638 GO:0046983
Vvi16g0728 237 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 66 229 - -
Vvi16g0728 237 MobiDBLite consensus disorder prediction 24 41 - -
Vvi16g0728 237 Coils Coil 116 136 - -
Vvi16g0728 237 FunFam Transcription factor bHLH126 59 147 - -
Vvi16g0728 237 MobiDBLite consensus disorder prediction 24 70 - -
Vvi16g0728 237 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 143 IPR036638 GO:0046983
Vvi16g0728 237 Pfam Helix-loop-helix DNA-binding domain 68 120 IPR011598 GO:0046983
Vvi16g0728 237 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 67 119 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0728 Vvi-Chr16 14755413 14756541 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0728 61 230 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G12540 42.222 1.30e-38 133
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi16g0728 HLH 1e-06 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0728 - - vvi:100249794 462.225