Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0727 ATGTTTCCTTTACACCAAGGCAATGAGCTGTTGTTCCGAATCCCCTATACACCCTCCAAACAATATATAATCCAACAAGATATGATCCTGGATCACGCTTCGCTGGAAGCCAGTAATCTTAGCAACCATAAAGGAAAAAGCCCGAATCGAAAATTATTTGCTCAGGACAACAATGATGAGATTTCTAATGATGGTAAGAAGAAGAAGAAGAAGATTGTGCATCGAGATGTCGAACGACAAAGGAGGCAAGATATGGCTACCCTTTACACATCACTTAGATCGCTGCTCCCTCTTGAATATATCAAGGGAAAACGTGCGATATCTGAACACATGAACGGGGCTGTGAATTATATCAAACACCTGCAGAAGAAGATTAAAGAATTGGGTGAAAAGAGGAATGAGCTTAAAAGTTTGGCTAATTCCAGCTCTAGGAACTCTTCAGGGAACTTCGTTACAGTGTGTCCTTGCTGGGGAGGAGTGGAGATTGTGGTCAGTAGTGGTGGAGAAAAGGAAGGGATGCCTTTGTCAAGAGCACTTGAAACACTGCTTGAAGAAGGACTTAGTGTTATTAGCTGCATCTCCACCAAAGTAAATGGAAGGTTGCTGCACACTATCCACTGCGAGGTGAGTGATATAACCAGCATCGATCTGCATGGTCTGCAACAGCAACTCTCTGATCAAGTGCTTCCTCATCTGGACAAACTTCCAAGTAACACTGCTTTGAGGAATATCCCCACCATCTGA 744 0.4328 MFPLHQGNELLFRIPYTPSKQYIIQQDMILDHASLEASNLSNHKGKSPNRKLFAQDNNDEISNDGKKKKKKIVHRDVERQRRQDMATLYTSLRSLLPLEYIKGKRAISEHMNGAVNYIKHLQKKIKELGEKRNELKSLANSSSRNSSGNFVTVCPCWGGVEIVVSSGGEKEGMPLSRALETLLEEGLSVISCISTKVNGRLLHTIHCEVSDITSIDLHGLQQQLSDQVLPHLDKLPSNTALRNIPTI* 248
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0727 247 CDD bHLH_AtORG2_like 74 136 - -
Vvi16g0727 247 Pfam Helix-loop-helix DNA-binding domain 70 122 IPR011598 GO:0046983
Vvi16g0727 247 Coils Coil 118 141 - -
Vvi16g0727 247 Gene3D - 60 148 IPR036638 GO:0046983
Vvi16g0727 247 PANTHER ACHAETE-SCUTE TRANSCRIPTION FACTOR-RELATED 57 225 - -
Vvi16g0727 247 MobiDBLite consensus disorder prediction 40 68 - -
Vvi16g0727 247 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 69 121 IPR011598 GO:0046983
Vvi16g0727 247 FunFam Transcription factor bHLH126 61 149 - -
Vvi16g0727 247 SMART finulus 75 127 IPR011598 GO:0046983
Vvi16g0727 247 MobiDBLite consensus disorder prediction 40 59 - -
Vvi16g0727 247 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 66 136 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0727 Vvi-Chr16 14745008 14746085 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0727 74 229 Basic Helix-Loop-Helix Transcription Factor Gene Family AT4G25410 47.059 1.30e-45 150
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vvi16g0727 HLH 3.4e-09 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0727 - - vvi:100254931 469.929