Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0726 ATGCCATATCGCCAGCCTCCGCCATTCCCAGTTCCATCTCCACCGCCATCGGCGTCTCCCACCACCCAATTCCACCCCTCTCCCCACCACGGTGCCCCGCCCCCATCTCGCCTCCTTACTCCGGTAGCTGGCGTTCTCGCCGGCTTCTCTTTCCTCCTCTGCCTGGTTGTTTTCTTCAGGAAACTCTGGCGGAAACGCACCGTTCCCGCCGATGCCAAGCCGCCGTACCGCTACTCCTACTCTGTCCTTCGCCATGCTACGTCGTCGTTCTCCGCTGCCAACCGCCTCGGCCAGGGAGGGTTCGGCTCCGTCTATCGTGGCACCCTCAAGTCAGGGAAAGAAATCGCCGTCAAGGTAATGGACTCCGGCTCTCTCCAAGGAGAGCGAGAGTTCCAGAACGAGCTCTTCTTCGCTGGCAGGATCGACTCAAATTACATTGTTCCGGTCATCGGCTTCTCCTCTGACCGGCGGCGTCAGAGAATGATTCTCGTCTATGAGTTGATGAGTAACGGAAACTTGCAAGATGCTTTGCTGGATCGCAAGTGCTCGGAGCTGATGGACTGGAAGAAAAGGTTTGAAATTGCTATGGATGTCGCCAAAGGAATTGAATATCTTCACAGCTTGGATCCGCCGGCGATTCACGGCGATATTAAGCCTAGTAACATACTATTAGATCGGTGCTTCTCGGCGAAAATCGGCGATTTTGGTCTGGCAAAGTCGAAATCGGAGGATCAGGTGGTGGTGGTGGTGGTGGATGATGCAATAAAGATGAACGGCAGAGAGGAGGCGAAGAAGAAGGAATTAGTGAGCTGTGGTGGAGGTGCAGTGGATGATAATGCGTCGGTGGTGGAGGATACAGAGAGCGTGGCAACGGGGTTCGAGGAGATGAGTGTGAATGTGGAGCAGTCGCCAGAGAGCTTCGCCGTGGATGCAGTGGCATCGTCTCCGGGATCAGAGACTTTTGATAGGGTTAGTGTTGAGAGTGTCGGGGGAAAGAGGAAGAAGAACATGGTCGGGAAGGATGGGTGGCCGCGGCAGGATAATGGGGCGATGGAGGTGGGTTCTGTAAAGGACTATGTGAGAGAATGGATGGGAATGGAGCTAAGAAAGGAAAGTCCCAATGACCACTGGATTGGGGCATCTTCTAGTGGTGCTAATTTGGACAAGTTAGAGAAAAAGAAGGAAAAGAGTTGGAAGAAGGAGAAGAGGAGGCCGGCCAGGGAGTGGTGGAAGGAGGAATTTTGTGAGGAGCTTGCTAGGAAAAAGAAGAAGAAGATGAAGCGCCAAAAGGGGAGGGATAAGGACTTTGGGGGAGAAAATTGGTGGCCGACAGATGAGGATATGTATGTAGATAGGAAGAAGAAGAGTAAGAGGAGCAGCAGAGGTGGGAGTAAGGGTAGTGTGGATTGGTGGTTGGATGGGCTGAGTGGTGAGCTTTGGAGAGCTCGACGCAACAGCCATGATTCGGCCGGTGGGGAAATTCCAAAGAGTGGTGGTATAAGCAGCACGCCGAGCATGAGGGGAACGATGTGTTATGTTGCTCCTGAGTATGGTGGTGGTGGAGACGTGTCGGAGAAGTGTGATGTGTATAGCTTTGGGGTTCTGCTGCTGGTTGTCATTGCTGGCCGACGGCCACTTCAGGTGACCGCCTCACCCATGGCGGAATTTCAAAGGGCAAATCTTATATCTTGGGCTCGGAACCTTGCCCGTGCTGGGAAGCTTATTAATCTGGTTGATCAGTCTATTCAGTCTTTGGACCGAGAACAAGCTCTCTTATGCATCATGGTTGCTCTCATCTGCCTCCAGAAATCACCTGCCCGGCGTCCTTCCATGAAAGAAGTTGTGGGCATGCTTTCAGTTTAG 1863 0.5309 MPYRQPPPFPVPSPPPSASPTTQFHPSPHHGAPPPSRLLTPVAGVLAGFSFLLCLVVFFRKLWRKRTVPADAKPPYRYSYSVLRHATSSFSAANRLGQGGFGSVYRGTLKSGKEIAVKVMDSGSLQGEREFQNELFFAGRIDSNYIVPVIGFSSDRRRQRMILVYELMSNGNLQDALLDRKCSELMDWKKRFEIAMDVAKGIEYLHSLDPPAIHGDIKPSNILLDRCFSAKIGDFGLAKSKSEDQVVVVVVDDAIKMNGREEAKKKELVSCGGGAVDDNASVVEDTESVATGFEEMSVNVEQSPESFAVDAVASSPGSETFDRVSVESVGGKRKKNMVGKDGWPRQDNGAMEVGSVKDYVREWMGMELRKESPNDHWIGASSSGANLDKLEKKKEKSWKKEKRRPAREWWKEEFCEELARKKKKKMKRQKGRDKDFGGENWWPTDEDMYVDRKKKSKRSSRGGSKGSVDWWLDGLSGELWRARRNSHDSAGGEIPKSGGISSTPSMRGTMCYVAPEYGGGGDVSEKCDVYSFGVLLLVVIAGRRPLQVTASPMAEFQRANLISWARNLARAGKLINLVDQSIQSLDREQALLCIMVALICLQKSPARRPSMKEVVGMLSV* 621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0726 620 ProSitePatterns Protein kinases ATP-binding region signature. 96 118 IPR017441 GO:0005524
Vvi16g0726 620 SUPERFAMILY Protein kinase-like (PK-like) 72 616 IPR011009 -
Vvi16g0726 620 MobiDBLite consensus disorder prediction 325 349 - -
Vvi16g0726 620 Gene3D Phosphorylase Kinase; domain 1 71 167 - -
Vvi16g0726 620 Gene3D Transferase(Phosphotransferase) domain 1 481 620 - -
Vvi16g0726 620 Pfam Protein tyrosine and serine/threonine kinase 93 246 IPR001245 GO:0004672|GO:0006468
Vvi16g0726 620 Gene3D Transferase(Phosphotransferase) domain 1 168 288 - -
Vvi16g0726 620 SMART serkin_6 90 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0726 620 PANTHER OS07G0586332 PROTEIN 19 619 IPR044576 -
Vvi16g0726 620 MobiDBLite consensus disorder prediction 326 341 - -
Vvi16g0726 620 MobiDBLite consensus disorder prediction 1 35 - -
Vvi16g0726 620 ProSiteProfiles Protein kinase domain profile. 90 620 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0726 Vvi-Chr16 14729817 14737239 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0726 496 618 Receptor kinase-like Gene Family AT3G58690 34.884 3.39e-12 66.6
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-XI Vvi16g0726 PK_Tyr_Ser-Thr 1.9e-27 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0726 - - vvi:100260029 1167.53