Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0724 ATGAGCGCCAGAGAGAGCGGAGGAGGGAATTCCAACTTCACCGTGGAAGGGAATCAGAATCTGGCGGAGGAGGAGGGGAGTAATCCCGCTCCGTCAGCGACGTCGTCCGGTGACGACACAGAGTCGTCGTTGTCCATCCTGACGGCGCCGTCGGAGGCGCCGCCTCCAGAGCCGGTTTTCGGAATGATGACGGTGTCGGGAAGAATGCAGGAAATGGAAGATGCGGTATCCGTGCAAACGAACCTTTGCCGGCCGGAGATCAACCGGGGGCTGCCGGTGCATTTCTTCGGCGTCTACGATGGTCATGGAGGATCTCATGTGGCGAACCTGTGCAGAGAGATGATGCACTTGATATTAGAGCAGGAGTTGATGAGCGTGGACAACACGCAGGAGGGTGCGCATGGTGGTGAACCAGGCGGCAAGGAGATTGAGAATAAAGAGGGGTGGACAAGAGCCCTGAAGAGGTGCTTTCAGAGAATGGACGAGGTGGTGCTAAACTCCTGCTTGTGCAGAAACGATTGGCGGCAGTGCAGCTGCCGCGGCATCATGGAGGTGGAAATGACGGGGACCACGGCGGTGGTGGCTATTATCACCACTGACCACATTGTTGTTGCCAACTGCGGGGATTCACGCGGCGTCCTCTGCCGTGAAGGCACCGCCATCCCTCTGAGCTTTGATCACAAGCCGGACAGATCAGATGAACTTGCTAGGATAAAATCCTCTGGAGGCCGAGTTATCATTATGAATGGAGCAAGAGTTGAGGGAATGCTTGGAATGTCACGAGCAATTGGAGACAGGTATCTAAAACCATTTATAACATCAGAGCCTGAGATAACATTCACAAAAAGAGAGGCAGGAGATGAGTGTTTAATTCTGGCAAGTGATGGCTTATGGGATGTTTTGCCTAATGAGGTGGCTTGTGGGGTAGCTTCTGGGTGCCTTCGACGAGAGTCTCATGCCACTACTGAAAACCTTAAGTCGGAGGATTGGAAAGAAAGTGAAAGCACTGGACAATTTTACCCAAATCATACTACACAGGCTGCTGCGCTTCTCACCCGCCTTGCTTTGGGACGGCAAAGCCTTGATAACATTAGTGTTGTCGTTGTTGACTTACAAAGGAGTTGA 1125 0.528 MSARESGGGNSNFTVEGNQNLAEEEGSNPAPSATSSGDDTESSLSILTAPSEAPPPEPVFGMMTVSGRMQEMEDAVSVQTNLCRPEINRGLPVHFFGVYDGHGGSHVANLCREMMHLILEQELMSVDNTQEGAHGGEPGGKEIENKEGWTRALKRCFQRMDEVVLNSCLCRNDWRQCSCRGIMEVEMTGTTAVVAIITTDHIVVANCGDSRGVLCREGTAIPLSFDHKPDRSDELARIKSSGGRVIIMNGARVEGMLGMSRAIGDRYLKPFITSEPEITFTKREAGDECLILASDGLWDVLPNEVACGVASGCLRRESHATTENLKSEDWKESESTGQFYPNHTTQAAALLTRLALGRQSLDNISVVVVDLQRS* 375
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0724 374 ProSitePatterns PPM-type phosphatase domain signature. 95 103 IPR000222 GO:0043169
Vvi16g0724 374 SMART PP2C_4 49 369 IPR001932 -
Vvi16g0724 374 SUPERFAMILY PP2C-like 58 372 IPR036457 -
Vvi16g0724 374 MobiDBLite consensus disorder prediction 1 49 - -
Vvi16g0724 374 PANTHER PROTEIN PHOSPHATASE 39 371 IPR015655 GO:0004722|GO:0006470
Vvi16g0724 374 Gene3D - 56 374 IPR036457 -
Vvi16g0724 374 CDD PP2Cc 59 371 IPR001932 -
Vvi16g0724 374 MobiDBLite consensus disorder prediction 1 60 - -
Vvi16g0724 374 Pfam Protein phosphatase 2C 60 318 IPR001932 -
Vvi16g0724 374 ProSiteProfiles PPM-type phosphatase domain profile. 59 371 IPR001932 -
Vvi16g0724 374 FunFam Probable protein phosphatase 2C 75 52 374 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0724 Vvi-Chr16 14705029 14709730 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0724 30 374 PP2C-type Phosphatase Gene Family AT5G51760 51.594 2.94e-115 338
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0724 K14497 - vvi:100242943 741.11