Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0716 ATGCCTTCTCTTTCCCTTGCTGATCCTGTTTCAGTATCCAAAGACAAGAAGGAGAAGAAGTTGAAGGTTAAGACCTTAGAAACTGAAGCCTCAATGATTAAGAAAGAGTCGAAATCGAAGAGGGTCAAGAGCGACCCAGAGATCTCGGGCTCTGATTCTGAGGATTTGAAGAAGAAAAAGACCAAGAAGAAGGAGAAGCGGAAAGCTTCGGAGATTGATGACGATAATGAGGACCAGATGAGCGAGACGAGCTCTGAATTGGGTGAGCCGGTGAATTCGAGTTTGAAGGCGAAGAAGAAGAAATTAAAGGTGCCGGAGATGGAAGAGGAAGAAGGGAAGGCAGAGGAAAACCCTAACGCGTTGTCCAATTTTCGGATTTCGGAGCCACTTAGGGAGAAGCTGAAGTCGAAGGGGATCGAAGCGTTGTTTCCCATTCAGGCTATGACGTTCGATACCATTCTTGATGGGTCTGATTTGGTTGGCCGGGCGCGTACTGGTCAGGGAAAAACACTGGCCTTTGTGTTGCCTATTTTGGAGTCTTTAATAAATGGGCCCAACAGAGGATCACGAAAGACTGGATATGGGAGACCACCATGCGTTTTGGTGCTTTTACCTACCAGGGAATTGGCAACTCAGGTGTATGCAGATTTTGATGTTTATGGTGGGGCAATAGGATTAACTTCATGCTGTTTATATGGTGGTGCTCCTTACCAAGCTCAAGAGATTAAGCTAAAAAGAGGAGTTGATATTGTTGTGGGAACACCTGGCCGTATTAAGGATCACATAGAGAGGGGAAATATTGACTTCAGCTCTTTAAAGTTCCGTGTCCTTGATGAGGCTGATGAAATGTTGAGGATGGGTTTTGTTGAAGATGTTGAACTTATTCTAGGCAAGGTGGAGGATGTAAGCAAAGTTCAGACACTACTTTTCAGTGCAACATTACCTGGCTGGGTGAAAGAAATTTCTTCTAGGTTTCTTAAACCAACCCTGAAAACAGCAGACCTTGTAGGTAATGAAAAAATGAAGGCCAGTACTAATGTTAGGCATATTGTTCTTCCCTGTTCTAGTTCAGCCAGATCCCAGGTCATTCCTGATGTTATTCGCTGTTATAGCAGTGGAGGTCGAACAATTATTTTTACTGAGACCAAGGATTCTGCTTCTGAACTTGCTGGGTTATTGCCTGGAGCACGAGCTTTGCATGGGGACATTCAGCAGTCTCAGCGTGAGGTCACGCTTTCTGGATTTAGGTCTGGCAAATTCATGACATTAGTGGCCACAAATGTAGCGGCAAGAGGATTGGACATTAATGATGTGCAGTTAATCATCCAGTGTGAGCCTCCTCGAGATGTTGAAGCTTACATCCATCGATCTGGACGCACAGGAAGAGCAGGCAATAGTGGGGTTGCTGTAATGCTTTTTGATCCAAGAAGGTCAAATATTTCTAAGATAGAACGAGAGTCTGGAGTAAAATTCGAACATGTATCTGCTCCTCAACCTGCTGATATTGCCAAATCTGCTGGTGTAGAAGCTGCAGGAACAATCACCCAAGTCTCTGATAGTGTGATTCCTGCATTCAAATCTGCTGCTGAGGAGCTCTTGAATACCTCTGGTCTATCAGCAGTTGAGTTGCTTGCAAAAGCACTTGCAAAGGCTTCTGGTTATACTGAGATAAAGAGTAGATCACTTCTCGCCTCCCTGGATAATCATGTGACTGTACTTCTTGAGGCTGGGAAACCAATCTACACACCATCTTTTGCATATGGGGTGTTGAGAAGATTCTTGCCTGAGGATAAGGTTGATTCAATTAAGGGCCTTGCTCTCACAGCTGATGGAAATGGTGCAGTGTTTGATGTAGCAACTGAAGACCTGGACGCATTTCTCGCTGGTCAGGAGAATGCAGCTAATGTGAGCTTAGAGGTGTTGAAGGCACTGCCACGCTTGCAAGAAAGAGACCAGTCAAGAGGGGGACGATTTGGAGGTGGTGGCCGTGGTGGTGGCTTTGGGGGAAGAGGTGGTGGTAGTAATAGGTTCTCAGGGGGAAGAGGTGGTCGGGGTGGTGGAGGTTTTTCAAATAGAAGAAATGATAGATTTTCTGGTGGCTCCAACCGTGGGAGGGGCCGCAGCAACAAATGGTGA 2136 0.4574 MPSLSLADPVSVSKDKKEKKLKVKTLETEASMIKKESKSKRVKSDPEISGSDSEDLKKKKTKKKEKRKASEIDDDNEDQMSETSSELGEPVNSSLKAKKKKLKVPEMEEEEGKAEENPNALSNFRISEPLREKLKSKGIEALFPIQAMTFDTILDGSDLVGRARTGQGKTLAFVLPILESLINGPNRGSRKTGYGRPPCVLVLLPTRELATQVYADFDVYGGAIGLTSCCLYGGAPYQAQEIKLKRGVDIVVGTPGRIKDHIERGNIDFSSLKFRVLDEADEMLRMGFVEDVELILGKVEDVSKVQTLLFSATLPGWVKEISSRFLKPTLKTADLVGNEKMKASTNVRHIVLPCSSSARSQVIPDVIRCYSSGGRTIIFTETKDSASELAGLLPGARALHGDIQQSQREVTLSGFRSGKFMTLVATNVAARGLDINDVQLIIQCEPPRDVEAYIHRSGRTGRAGNSGVAVMLFDPRRSNISKIERESGVKFEHVSAPQPADIAKSAGVEAAGTITQVSDSVIPAFKSAAEELLNTSGLSAVELLAKALAKASGYTEIKSRSLLASLDNHVTVLLEAGKPIYTPSFAYGVLRRFLPEDKVDSIKGLALTADGNGAVFDVATEDLDAFLAGQENAANVSLEVLKALPRLQERDQSRGGRFGGGGRGGGFGGRGGGSNRFSGGRGGRGGGGFSNRRNDRFSGGSNRGRGRSNKW* 712
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0716 711 SUPERFAMILY RNA-binding domain, RBD 557 640 IPR035979 GO:0003676
Vvi16g0716 711 MobiDBLite consensus disorder prediction 694 711 - -
Vvi16g0716 711 CDD DEADc 130 327 - -
Vvi16g0716 711 MobiDBLite consensus disorder prediction 1 118 - -
Vvi16g0716 711 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 361 503 IPR001650 -
Vvi16g0716 711 ProSitePatterns DEAD-box subfamily ATP-dependent helicases signature. 276 284 IPR000629 -
Vvi16g0716 711 CDD GUCT_RH7_like 560 645 - -
Vvi16g0716 711 Coils Coil 16 36 - -
Vvi16g0716 711 MobiDBLite consensus disorder prediction 649 711 - -
Vvi16g0716 711 Pfam DEAD/DEAH box helicase 143 320 IPR011545 GO:0003676|GO:0005524
Vvi16g0716 711 MobiDBLite consensus disorder prediction 11 59 - -
Vvi16g0716 711 SMART helicmild6 387 464 IPR001650 -
Vvi16g0716 711 SMART ultradead3 138 350 IPR014001 -
Vvi16g0716 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 197 476 IPR027417 -
Vvi16g0716 711 Gene3D - 13 332 IPR027417 -
Vvi16g0716 711 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 150 332 IPR014001 -
Vvi16g0716 711 CDD SF2_C_DEAD 347 473 - -
Vvi16g0716 711 MobiDBLite consensus disorder prediction 93 116 - -
Vvi16g0716 711 Gene3D - 345 568 IPR027417 -
Vvi16g0716 711 Pfam GUCT (NUC152) domain 553 648 IPR012562 GO:0003723|GO:0004386|GO:0005524
Vvi16g0716 711 Gene3D - 569 642 - -
Vvi16g0716 711 Pfam Helicase conserved C-terminal domain 369 464 IPR001650 -
Vvi16g0716 711 PANTHER ATP-DEPENDENT RNA HELICASE RHLE-RELATED 59 532 - -
Vvi16g0716 711 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 62 299 IPR027417 -
Vvi16g0716 711 FunFam DEAD-box ATP-dependent RNA helicase 7 570 642 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0716 Vvi-Chr16 14556625 14563894 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0716 116 470 Eukaryotic Initiation Factors Gene Family AT3G19760 30.220 6.66e-40 150
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0716 K16911 - vvi:100258263 1174.84