Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0710 ATGTCATCATCTAATTCTCCATGTGCGGCGTGCAAGCTTCAAAGGCGGAAATGTACACAAGAGTGTATATACGCACCCTATTTCCCACCAGATCAGCCTCAAAAATTCGCTAACGTCCACAAGGTCTTCGGTGCAAGCAATGTTGCAAAGCTTCTCAACGAAATAAATGCTGCAAATCGAGAAGATGCCGTGAATTCCCTAGCTTATGAAGCGGAGGCTCGTCTTCACGATCCCGTCTATGGCTGTGTTGGTATGATTTCAATTCTTCAACAACAACTTAAGCATCTTCAGAATGACCTTTTGGCTGCCAAAAAGGAACTAGCTGCATATATTGGTCCGTCAGCGATGGCACATGTCGGGTATATGCCACAACAATACATGAGCGATCCTTCTTCATCGTCGGTCATTCCTTATAACATGTCGCCAATTTTGGGTCTTCCCCCTGGTGCTCCACATGGTGGGCAATTGATAATTCGTGAGCCACAGACGCAGCAGACCCAGCAGAATCAGCATCAGCTACAACAGATTCTTGAGGCTCAGCAATTAGCTGCAGCTATGGCAGCAAGAGGGCAAGAGATAATGAGGACTCATGAGCGGCAGCAACAGGAACAAGAGCTCCTTCGGTTCGACAATGGGTTTGACGCTGATGGTATAGTTGGTGCTGCAAGTAGTTTCAACCAGATGACTACAGCTGCAATGTCACCATCTCGGGCTTTGGGTACATTTGGACATCAGCTTCAGCTTCAGCCCCAGCCCCAGCCCCAGCCCCAGCTGCTTCCTCAAACCCAAAAACAACCTCAGTTACCTCAACAGCAGCAAGGATTTGGAAGCGAGGACGCCAGAAACGTGGGCCCATCTTGTTAA 864 0.485 MSSSNSPCAACKLQRRKCTQECIYAPYFPPDQPQKFANVHKVFGASNVAKLLNEINAANREDAVNSLAYEAEARLHDPVYGCVGMISILQQQLKHLQNDLLAAKKELAAYIGPSAMAHVGYMPQQYMSDPSSSSVIPYNMSPILGLPPGAPHGGQLIIREPQTQQTQQNQHQLQQILEAQQLAAAMAARGQEIMRTHERQQQEQELLRFDNGFDADGIVGAASSFNQMTTAAMSPSRALGTFGHQLQLQPQPQPQPQLLPQTQKQPQLPQQQQGFGSEDARNVGPSC* 288
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0710 287 Coils Coil 86 106 - -
Vvi16g0710 287 MobiDBLite consensus disorder prediction 247 287 - -
Vvi16g0710 287 ProSiteProfiles LOB domain profile. 6 107 IPR004883 -
Vvi16g0710 287 Pfam Lateral organ boundaries (LOB) domain 7 103 IPR004883 -
Vvi16g0710 287 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 4 185 - -
Vvi16g0710 287 MobiDBLite consensus disorder prediction 260 279 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0710 Vvi-Chr16 14420052 14420915 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0710 1 234 AS2 family AT5G66870 50.584 1.17e-67 211
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vvi16g0710 LOB 4.2e-41 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0710 - - vvi:100242948 465.307