Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0708 ATGATGGGTGAGAAACTGTTGTTAGAGGTGAAGAAGAGGGTTGTTGTGTGTTTGTTCATCTGGGTTTTCCTCTTTCTCTCCTCTCTTGCTTTCCAGCTCAATGATGAAGGAAAAGCCTTGATGTCCATAAAGGCGTCGTTTAGCAACGTGGCTAACGCACTCCTCGACTGGGACGATGTCCATAATGCTGATTTCTGCTCGTGGAGAGGAGTTTTCTGTGACAATGTCAGCTTGTCAGTTGTTTCTCTGAACTTGTCAAATTTGAACTTGGGTGGGGAGATTTCATCAGCAGTTGGTGATTTGAAGAATCTGCAGTCCATAGACCTGCAGGGGAATAGATTAACTGGTCAACTCCCAGATGAGATTGGCAACTGTGTTTCTCTTTCAACTTTGGATTTGTCTGATAATCTGCTGTATGGGGACATACCCTTTTCAATTTCCAAGCTTAAGAAACTTGAGCTGTTGAATTTGAAGAACAATCAATTGACTGGGCCTATTCCATCAACATTGACTCAGATTCCCAACCTGAAAACTATTGACCTGGCTCGAAACCAGCTTACGGGTGAGATACCAAGGCTAATCTACTGGAATGAAGTATTGCAATACCTTGGGTTGCGGGGGAATTCATTGACTGGAACCTTGTCCCCTGACATGTGCCAATTAACAGGCCTGTGGTATTTTGATGTAAGAGGCAATAATCTGACTGGAACAATCCCTGATAGCATCGGTAACTGTACAAGCTTTGAAATCCTGGACATATCATATAACCAGATAACCGGGGAGATTCCATACAATATTGGGTTCCTACAAGTGGCTACACTGTCACTCCAAGGAAATAAGCTAACAGGAAAGATTCCAGAGGTGATTGGTCTAATGCAAGCCCTTGCTGTTTTGGATTTAAGTGAGAATAACCTTATTGGGCCCATACCACCAATACTTGGCAATTTAAGTTATACAGGAAAACTGTACCTCCATGGCAACAAGCTTACTGGACCAATTCCACCAGAACTTGGCAATATGTCAAAGCTTAGCTATTTGCAATTGAATGACAATCAATTGATTGGCAGTATTCCTGCTGAGCTTGGGAAGCTGGAGCAGTTGTTTGAACTGAATCTTGCTAACAATGATCTAGAAGGACCAATTCCACATAACATCAGTTCTTGCACAGCATTGAATCAATTCAATGTGCATGGTAATCATCTAAGTGGATCTATTCCTCCAGGCTTCCAGAATCTAGAGAGCTTGACCTATCTAAATCTTTCATCAAACAATTTCAAAGGCAGGATACCCCTTGAGCTGGGACGAATTGTCAATCTTGATACCTTGGATCTATCTAGCAATGGTTTCTTGGGAACTGTGCCTGCTTCTGTCGGTGATCTAGAGCATCTTCTCACACTGAATTTGAGTAGAAATAATCTTGATGGCCCAGTGCCAGCAGAATTTGGGAATCTCAGGAGCATACAGACAATTGATATGTCATTCAACAAGCTCTCTGGTGGTATCCCTAGGGAGTTAGGTCAGTTGCAGAATATTGTGTCATTGATCCTGAACAACAACAATTTGGATGGAGAAATCCCTGATCAGTTGACCAATTGTTTCAGCCTCACCATTTTGAACGTTTCCTACAACAATTTCTCAGGGGTTGTACCTCCAATTCGGAACTTCTCACGATTTTCGCCTGACAGCTTCATTGGAAACCCATTATTATGTGGCAACTGGTTGGGATCAATCTGTGGCCCATATGTTCCCAAATCCAGAGCAATTTTTTCAAGAACTGCAGTTGCATGTATAGCTTTGGGCTTCTTCACTCTATTATTGATGGTTGTTGTTGCAATTTACAAATCCAACCAACCAAAGCAACAGATAAATGGTTCTAACATTGTGCAAGGTCCTACCAAGCTTGTAATTCTGCACATGGATATGGCTATTCACACCTACGAGGATATCATGAGAATCACTGAAAATTTAAGCGAAAAGTACATTATAGGATATGGTGCTTCTAGCACAGTGTACAAGTGTGTATTGAAGAACTCCCGACCTATTGCAATTAAGCGAATCTATTCCCAATATGCACACAACTTACGAGAGTTTGAGACTGAACTTGAAACCATTGGCAGCATCAAACATAGAAACCTTGTTAGCTTGCATGGTTACTCACTATCACCCAAAGGAAACCTGCTCTTCTATGATTACATGGAAAATGGTTCTCTATGGGATCTTCTTCACGGACCATCAAAGAAGGTGAAACTTGATTGGGAAACCCGCCTGAAAATAGCAGTTGGAGCTGCTCAAGGACTTGCTTATCTTCATCATGATTGCAATCCTAGAATCATTCACAGGGATGTTAAGTCCTCAAATATCCTCCTGGATGAAAATTTTGATGCTCATCTCTCTGACTTTGGGATTGCAAAATGCATTCCTACTGCAAAAACTCATGCATCAACTTATGTTCTTGGTACAATTGGCTACATTGATCCAGAGTATGCCCGTACCTCGCGGCTCAATGAAAAATCTGATGTTTATAGTTTTGGCATTGTCCTTCTGGAGCTGCTGACAGGGAAGAAAGCTGTAGACAATGAATCAAATTTGCATCAACTGATATTGTCAAAGGCAGACGATAACACTGTAATGGAAGCAGTTGACCCAGAGGTTTCTGTTACATGCATGGACTTAGCTCACGTCAGGAAAACCTTCCAACTTGCTCTTCTGTGCACAAAGCGCCATCCATCCGAGAGGCCAACCATGCATGAAGTTGCCAGGGTGTTGGTCTCTTTGCTTCCAGCTCCTCCAGCTAAACCCTGCTCCTCTCCTCCAAAGCCTATTGATTATGCCCACTTTGTGATGGACAAAGGCCAGAAGCAGCAAAATGCCCAGCTACCGCCCCATGTCGAACCAGACAATAATACCTCCTCCAATGATGCCCAATGGTTTGTCAGGTTCCATGAGGTCATATCCAAGAACTCCCTATAA 2970 0.4256 MMGEKLLLEVKKRVVVCLFIWVFLFLSSLAFQLNDEGKALMSIKASFSNVANALLDWDDVHNADFCSWRGVFCDNVSLSVVSLNLSNLNLGGEISSAVGDLKNLQSIDLQGNRLTGQLPDEIGNCVSLSTLDLSDNLLYGDIPFSISKLKKLELLNLKNNQLTGPIPSTLTQIPNLKTIDLARNQLTGEIPRLIYWNEVLQYLGLRGNSLTGTLSPDMCQLTGLWYFDVRGNNLTGTIPDSIGNCTSFEILDISYNQITGEIPYNIGFLQVATLSLQGNKLTGKIPEVIGLMQALAVLDLSENNLIGPIPPILGNLSYTGKLYLHGNKLTGPIPPELGNMSKLSYLQLNDNQLIGSIPAELGKLEQLFELNLANNDLEGPIPHNISSCTALNQFNVHGNHLSGSIPPGFQNLESLTYLNLSSNNFKGRIPLELGRIVNLDTLDLSSNGFLGTVPASVGDLEHLLTLNLSRNNLDGPVPAEFGNLRSIQTIDMSFNKLSGGIPRELGQLQNIVSLILNNNNLDGEIPDQLTNCFSLTILNVSYNNFSGVVPPIRNFSRFSPDSFIGNPLLCGNWLGSICGPYVPKSRAIFSRTAVACIALGFFTLLLMVVVAIYKSNQPKQQINGSNIVQGPTKLVILHMDMAIHTYEDIMRITENLSEKYIIGYGASSTVYKCVLKNSRPIAIKRIYSQYAHNLREFETELETIGSIKHRNLVSLHGYSLSPKGNLLFYDYMENGSLWDLLHGPSKKVKLDWETRLKIAVGAAQGLAYLHHDCNPRIIHRDVKSSNILLDENFDAHLSDFGIAKCIPTAKTHASTYVLGTIGYIDPEYARTSRLNEKSDVYSFGIVLLELLTGKKAVDNESNLHQLILSKADDNTVMEAVDPEVSVTCMDLAHVRKTFQLALLCTKRHPSERPTMHEVARVLVSLLPAPPAKPCSSPPKPIDYAHFVMDKGQKQQNAQLPPHVEPDNNTSSNDAQWFVRFHEVISKNSL* 990
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0708 989 PANTHER LRR RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE-RELATED 172 923 - -
Vvi16g0708 989 Gene3D Transferase(Phosphotransferase) domain 1 732 929 - -
Vvi16g0708 989 SMART serkin_6 656 923 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0708 989 SMART LRR_typ_2 412 436 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 221 245 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 149 172 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 101 125 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 460 483 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 508 532 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 173 197 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 340 364 IPR003591 -
Vvi16g0708 989 SMART LRR_typ_2 292 316 IPR003591 -
Vvi16g0708 989 SUPERFAMILY Protein kinase-like (PK-like) 636 922 IPR011009 -
Vvi16g0708 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 627 731 - -
Vvi16g0708 989 CDD STKc_IRAK 662 922 - -
Vvi16g0708 989 Pfam Leucine rich repeat N-terminal domain 34 74 IPR013210 -
Vvi16g0708 989 MobiDBLite consensus disorder prediction 952 971 - -
Vvi16g0708 989 Pfam Protein kinase domain 659 919 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0708 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 198 307 - -
Vvi16g0708 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 308 581 - -
Vvi16g0708 989 FunFam LRR receptor-like serine/threonine-protein kinase ERL1 33 197 - -
Vvi16g0708 989 SUPERFAMILY L domain-like 316 571 - -
Vvi16g0708 989 Pfam Leucine Rich Repeat 103 125 IPR001611 GO:0005515
Vvi16g0708 989 ProSitePatterns Serine/Threonine protein kinases active-site signature. 777 789 IPR008271 GO:0004672|GO:0006468
Vvi16g0708 989 Gene3D Ribonuclease Inhibitor 274 580 IPR032675 -
Vvi16g0708 989 Gene3D Ribonuclease Inhibitor 33 196 IPR032675 -
Vvi16g0708 989 FunFam LRR receptor-like serine/threonine-protein kinase ERECTA 732 932 - -
Vvi16g0708 989 SUPERFAMILY L domain-like 33 329 - -
Vvi16g0708 989 Gene3D Ribonuclease Inhibitor 197 273 IPR032675 -
Vvi16g0708 989 Pfam Leucine Rich repeat 244 261 IPR001611 GO:0005515
Vvi16g0708 989 ProSitePatterns Protein kinases ATP-binding region signature. 662 684 IPR017441 GO:0005524
Vvi16g0708 989 ProSiteProfiles Protein kinase domain profile. 656 926 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0708 989 Gene3D Phosphorylase Kinase; domain 1 620 731 - -
Vvi16g0708 989 Pfam Leucine rich repeat 128 186 IPR001611 GO:0005515
Vvi16g0708 989 Pfam Leucine rich repeat 438 497 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0708 Vvi-Chr16 14344649 14351507 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0708 103 989 Receptor kinase-like Gene Family AT5G07180 77.928 0.0 1381
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XIIIb Vvi16g0708 Pkinase 5.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0708 K20718 - vvi:100256609 1915.58