Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0702 ATGGATCCACCACTATGCGTTAATGGTTGTGGCTTCTTCGGGACACCCGCCACTCAAAACCTATGTTCTAAGTGCTACAAGGATTTTCTCAAGGAAGAAGAAGAGGCCGCGAAAGCAAAAACAAAGTCCATGGAGAAAGCTATGGGTTCAACAGTAGCGTCAACCTCATCCGTTGATGATGTTGTTACCTCCATGACTCAATTATCTTTATCTTCAGAAAATACGAAGAAAACTATCAGTGATGATTCTTCCACAAAGAAGAAGGTGGAGCGGTGCGAGACATGTAAGAAGAAAGTGGGAATAATAGGATTTAAGTGCCGATGTGGAAGTATGTTTTGTGCTGAGCATCGTTTACCTGAAAAACATGAGTGTAGCTTCGACTATAAGACCATGGGACGTGAGATTTTGAAGAAGCAGATTCCATTAATTAAGCCAGATAAGTTGGAAGGAAGGGTCTAA 459 0.4183 MDPPLCVNGCGFFGTPATQNLCSKCYKDFLKEEEEAAKAKTKSMEKAMGSTVASTSSVDDVVTSMTQLSLSSENTKKTISDDSSTKKKVERCETCKKKVGIIGFKCRCGSMFCAEHRLPEKHECSFDYKTMGREILKKQIPLIKPDKLEGRV* 153
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0702 152 SMART AN1_Zf_4 92 129 IPR000058 GO:0008270
Vvi16g0702 152 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 5 44 - -
Vvi16g0702 152 Gene3D - 65 147 IPR035896 -
Vvi16g0702 152 ProSiteProfiles Zinc finger A20-type profile. 1 34 IPR002653 GO:0003677|GO:0008270
Vvi16g0702 152 SUPERFAMILY AN1-like Zinc finger 79 146 IPR035896 -
Vvi16g0702 152 FunFam Zinc finger A20 and AN1 domain-containing stress-associated protein 1 1 50 - -
Vvi16g0702 152 ProSiteProfiles Zinc finger AN1-type profile. 86 132 IPR000058 GO:0008270
Vvi16g0702 152 Coils Coil 27 47 - -
Vvi16g0702 152 PANTHER AN1-TYPE ZINC FINGER PROTEIN 2 149 - -
Vvi16g0702 152 SMART A20_3 3 27 IPR002653 GO:0003677|GO:0008270
Vvi16g0702 152 Pfam AN1-like Zinc finger 92 129 IPR000058 GO:0008270
Vvi16g0702 152 Pfam A20-like zinc finger 5 27 IPR002653 GO:0003677|GO:0008270
Vvi16g0702 152 Gene3D - 1 51 - -
Vvi16g0702 152 FunFam Zinc finger AN1-type containing 6 66 147 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0702 Vvi-Chr16 14299091 14299549 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0702 5 149 C2H2 Transcription Factor Family AT3G52800 39.610 3.54e-32 110
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0702 - - vvi:100265151 281.182