Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0688 ATGGAGGGAACAGAGGGTATAAATTCTGGGGTTACAGTGAAGGGTGAGGAAGCTCCGGACACCTACCGGGTGGCAGCGAGGAGCGAAAACCCTAGTGAATTTGGTGGGTCCACAATGACAGCTGTGTCTCCGGTAGCGGCTCCGGCTCCTACTCCGGCCACCGCGCCGGCTCCAGCACCCGGATCCGCGCCGACACCGGCACCTGTCAGCGTGGCCATGCCAAGTTCGGAAATGAAGAAGAAGAGAGGGAGGCCGAGGAAGTATGGTCCCGGTGGGTCCCTGACGATGGCATTGTCGCCGATGCCAATATCCTCCTCAATTCCACTCACTGGAGAGTTCTCAGCATGGAAACGGGGTAGAGGGCGGCCGGTGGATTCATTCAAGAAGCAGCACAAATCAGAGTCAGAGAGTGCAGGTGAGCGGGTTGCATATTCTGTTGGTGCTAATTTCACACCCCATGTGATCACTGTTAATGCTGGCGAGGATGTTACTATGAAGATCATATCATTCTCACAACAAGGGTCCCGGGCTATTTGTATTCTTTCTGCAAATGGTGCAATTTCGAATGTTACCCTTCGTCAGCCTAACTCTTCTGGGGGTACTTTGACTTATGAGGGTCGTTTTGAGATACTTTCTCTGTCTGGATCATTTATGCCTAGTGAAAGCGGAGGAACAAAGAGCAGATCTGGTGGGATGAGTGTCTCTTTGGCAGGTCCAGATGGCCGTGTTCTGGGAGGAGGACTTGCTGGTCTATTAGTAGCTGCTGGCCCTGTTCAGGTTCTAGTGGGAAGTTTTCTGCCAGGTCACCAGCAGGAGCAAAAGCCAAAGAAGCAGAGAATCGAGCCTGTACAAGCTGCTATCCCAGCTACTGTGAATTCTATGCCTAGAGAAGAAACACTGGGGGCAAATGGTGGACCAAATCTGAATCTCACATCTCCCTCTTCCTTCCATGGAGACACCTGGGCTTCTCTGAACTCCATGCAGGGCTCAAGGAATCTGGATATTGAAAATAAATTACCGGTATCTGAAGGGGAAACTAAAGGACCCAGTCAATGA 1056 0.5161 MEGTEGINSGVTVKGEEAPDTYRVAARSENPSEFGGSTMTAVSPVAAPAPTPATAPAPAPGSAPTPAPVSVAMPSSEMKKKRGRPRKYGPGGSLTMALSPMPISSSIPLTGEFSAWKRGRGRPVDSFKKQHKSESESAGERVAYSVGANFTPHVITVNAGEDVTMKIISFSQQGSRAICILSANGAISNVTLRQPNSSGGTLTYEGRFEILSLSGSFMPSESGGTKSRSGGMSVSLAGPDGRVLGGGLAGLLVAAGPVQVLVGSFLPGHQQEQKPKKQRIEPVQAAIPATVNSMPREETLGANGGPNLNLTSPSSFHGDTWASLNSMQGSRNLDIENKLPVSEGETKGPSQ* 352
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0688 351 SUPERFAMILY AF0104/ALDC/Ptd012-like 149 271 - -
Vvi16g0688 351 MobiDBLite consensus disorder prediction 118 138 - -
Vvi16g0688 351 MobiDBLite consensus disorder prediction 1 100 - -
Vvi16g0688 351 Gene3D - 152 283 - -
Vvi16g0688 351 Pfam Plants and Prokaryotes Conserved (PCC) domain 152 265 IPR005175 -
Vvi16g0688 351 MobiDBLite consensus disorder prediction 49 67 - -
Vvi16g0688 351 CDD DUF296 151 242 IPR005175 -
Vvi16g0688 351 MobiDBLite consensus disorder prediction 304 335 - -
Vvi16g0688 351 FunFam AT-hook motif nuclear-localized protein 1-like 152 282 - -
Vvi16g0688 351 PANTHER AT-HOOK MOTIF NUCLEAR-LOCALIZED PROTEIN 9 50 315 IPR039605 GO:0003680
Vvi16g0688 351 ProSiteProfiles PPC domain profile profile. 147 286 IPR005175 -
Vvi16g0688 351 MobiDBLite consensus disorder prediction 289 351 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0688 Vvi-Chr16 14008369 14015993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0688 1 288 AT-hook Motif Nuclear Localized (AHL) Family AT4G12080 55.700 7.14e-95 285
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0688 - - vvi:100254941 579.711