Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0683 ATGTTTTGGGGAATCAAAGTAGTACCAGGTGAAGAACACCCCCTAATTCCATCTGATGTTCTGGGGACACTTCATATAACTCAGGCAACCCTAGATACTGGTCCATCTAAAGAAAGGAGCATAGTTCAGTGTTCCGTGGGAGATAAGGAGCCAATTTTCTTGTGTTCTTTGTCTCGGGGTAAGGTTGAGTGTTGCCCCTTGAATCTTGAATTTGAGGGGAATGAATCAGTAGCCTTTTCAGTTATAGGCCCGCAAAGCGTTTATCTCTCTGGCTATTTTCGGGCTGATTCTAAAGATGATGATGCAGAACATTATGAAATTGATTCAGATGGGGAGGATATTGCTGAGACTGATGAAGATGAGTCTTCTACATATGATACTGAAGATGAATATGACGACGACTTTATTGATGACAGTGACTTTGAAATGTTTCCACCTTCGCCTGTCCCAAATAGTGGAGTTGTAATTGAGGAGATTGTGGAGGAGGAGAAACTTGCAAATGGAAGTAATCAATCTAAGAGACTAAAGAAGCCCCAATTGAATGAGTCTGATGAGAACAAGGACTCTCAACATCAAATTGTTGCCAAGAGTGGTAATGGTGTACAAGTTTTGGAAAGTGAAGATGAAGATGGTTTTCCAATTGCTGCCTCACATAAAAGCAAATCCAATGATCAGAACCCTGCATCAAAAGCAGAAGAAAAGACAGATAAGATCACAACTAAAGAAGGCAAGAAGAAGAAGGCAAAAGATTCTGGTGATCATGCTACAGGCTTAAAAAGAAAGCTTAATAGTGTTGTCCAAGAGGATCAGCCAGAAAGGGAAGCCAGCCAACCTTTTGACTCATCTAAGCTGTCTACTGAAGTTGTTACTGAGAATGATGTCAAGCGGAAGAAAAAGAAGCAGCAGAAAGAGCGAAAAGCTAACAAGGCTGGTATTGGTGACAAGTCTGAAGTTCATATGGAGGATAAAACCCAATCTGAGGAAGCAGAGACCAGCAATGCCCACCAGGTCCTGCCAGTTGCAAATGAACTTGATCAGAAGGTAAACAATGAAAAGAGTATGGACATTGTGTCTGATCATGATGTGGATGAAAATCACTCTGAGAAGAAAAAGAAGAAAAAGAAAAAGAAGAGCACTGGGGATGTGAAAAAGGAGCAAAATATTACAGCTGTGGGAGATGAGAATCGATCAATTGTGGAGATGGAGAAGAAAACTGAAGCCAAGCGATCTCAAGTGAGGACTTTTGGAAATGGATTGGTTATTGAGGAGGTAGCCATGGGCAAACCAGATGGCAAAAGAGCTTCTCCTGGAAAAAAGGTCAGTGTCCACTACATTGGCAAGCTCAAGAAGAATGGCAAAATATTTGACTCTAATGTTGGAAGAGCACCCTTCAAATTCCGTCTAGGTGTAGGGCAAGTTATAAAGGGATGGGATGTTGGAGTCAATGGTATGCGTGTTGGGGACAAAAGAAGGCTCACAATTCCACCATCAATGGGTTACGGGGATCAAGGTGCTGGTAAGACGATACCACCAAATTCATGGCTGGTTTTTGATGTTGAGCTGGTTGCTGTCAATTGA 1578 0.4195 MFWGIKVVPGEEHPLIPSDVLGTLHITQATLDTGPSKERSIVQCSVGDKEPIFLCSLSRGKVECCPLNLEFEGNESVAFSVIGPQSVYLSGYFRADSKDDDAEHYEIDSDGEDIAETDEDESSTYDTEDEYDDDFIDDSDFEMFPPSPVPNSGVVIEEIVEEEKLANGSNQSKRLKKPQLNESDENKDSQHQIVAKSGNGVQVLESEDEDGFPIAASHKSKSNDQNPASKAEEKTDKITTKEGKKKKAKDSGDHATGLKRKLNSVVQEDQPEREASQPFDSSKLSTEVVTENDVKRKKKKQQKERKANKAGIGDKSEVHMEDKTQSEEAETSNAHQVLPVANELDQKVNNEKSMDIVSDHDVDENHSEKKKKKKKKKSTGDVKKEQNITAVGDENRSIVEMEKKTEAKRSQVRTFGNGLVIEEVAMGKPDGKRASPGKKVSVHYIGKLKKNGKIFDSNVGRAPFKFRLGVGQVIKGWDVGVNGMRVGDKRRLTIPPSMGYGDQGAGKTIPPNSWLVFDVELVAVN* 526
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0683 525 MobiDBLite consensus disorder prediction 106 140 - -
Vvi16g0683 525 ProSiteProfiles FKBP-type peptidyl-prolyl cis-trans isomerase domain profile. 437 525 IPR001179 GO:0003755
Vvi16g0683 525 MobiDBLite consensus disorder prediction 306 329 - -
Vvi16g0683 525 Gene3D Nucleoplasmin core domain 1 99 - -
Vvi16g0683 525 MobiDBLite consensus disorder prediction 177 191 - -
Vvi16g0683 525 Gene3D - 357 525 IPR046357 GO:0003755
Vvi16g0683 525 SUPERFAMILY FKBP-like 389 524 - -
Vvi16g0683 525 PANTHER FKBP-TYPE PEPTIDYL-PROLYL CIS-TRANS ISOMERASE FKPA 40 325 - -
Vvi16g0683 525 MobiDBLite consensus disorder prediction 106 385 - -
Vvi16g0683 525 Pfam Nucleoplasmin-like domain 2 93 IPR041232 -
Vvi16g0683 525 FunFam Peptidyl-prolyl cis-trans isomerase 413 525 - -
Vvi16g0683 525 PIRSF FK506-bp_FPR3 1 45 IPR023566 GO:0003755
Vvi16g0683 525 PIRSF FK506-bp_FPR3 202 348 IPR023566 GO:0003755
Vvi16g0683 525 PIRSF FK506-bp_FPR3 265 525 IPR023566 GO:0003755
Vvi16g0683 525 PIRSF FK506-bp_FPR3 43 270 IPR023566 GO:0003755
Vvi16g0683 525 Pfam FKBP-type peptidyl-prolyl cis-trans isomerase 432 522 IPR001179 GO:0003755
Vvi16g0683 525 MobiDBLite consensus disorder prediction 348 368 - -
Vvi16g0683 525 MobiDBLite consensus disorder prediction 225 257 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0683 Vvi-Chr16 13936477 13955129 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0683 433 524 Calmodulin-binding Proteins AT5G48570 32.653 1.45e-07 52.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0683 K14826 - vvi:100258340 945.266