Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0680 ATGTGCAAAAGCTGTGAAGCAGAAGGTGGGAAGTGCAGATTGAAGAAGAGTAATAGCAAGGAACCTGAAACCCAATGTGTCAAAGGTGTAACCCTTGGTTCCATTCTTCTTATTCTTGGAACCGTTGCACTTCATCGTGTATATAGCTTGAAGAAATTGGAAAGAAACAATCAAATAAAGATTGAAAAGTTCTTGGAAGATTACATAGCTCTCAAGCCTACAAGATACTCTTATGCTGATATTAAGAAGATCACAAATCAATTCCAGGATAAATTGGGTGAAGGAGGTTGTGGAACAGTGTATAAGGGAAAGCTGTCCGATGAAGTTCATGTTGCAGTCAAGATCCTGAACAACTCCAAAGGAAATGGAGAGGAGTTTATTAATGAAGTAGGAACCATGGGTAGAATCCACCATGTCAATGTTGTTCGCTTGGTTGGCTTTTGTGCTGATGGATTTAGACGAGCTCTTATTTATGAGTTCTTACCAAATGAGTCGCTAGAGAAGTTCATATTTTCAAGAACAACTGAAAACCATTCACTTGGTTGGAAAAAGCTTCAAGATATTGCTTTAGGTATTGCCAAAGGAATTGAATATCTTCACCAAGGTTGTGATCAAAGAATCCTCCATTTTGATATCAAACCTCATAATATTTTGCTTGATCACAACTTTAATCCAAAAATATCTGATTTTGGTCTTGCCAAATTGTGTTCCAAGGAACAAAGTGCAGTTTCTATGACTTCAGCTAGGGGGACCATGGGCTATATTGCTCCAGAAATGTTATCTAGGAATTTTGGGAATGTATCTTACAAGTCAGATGTTTTTAGTTATGGAATGCTATTGCTTGAAATGGTAGGAGGAAGGAAGAATATTGATATCACTGTGGATAACACTTGCCAAGTATACTTCCCAGAATGGATTTATAATCATCTAGATCAAGGTGAAGAGTTACAAATTCGAATTGATGAAGATGGAGATACTCAAATAGTAAAAAAATTGACAATTGTGGGACTTTGGTGTATTCAGTGGTTCTCAGCGGATCGTCCTTCTATGAAACTTGTTGTTCAGATGTTGGAAGGAGAACATAATTTATCCATGCCTCCGAATCCTTTCACTTGCACTGGTCCAACAAAAACAAATGCAAGCACACCTGAAAGATACCTTCAACAAGAGTTAATAGTCATCTCAGAAATTGAATGA 1197 0.3734 MCKSCEAEGGKCRLKKSNSKEPETQCVKGVTLGSILLILGTVALHRVYSLKKLERNNQIKIEKFLEDYIALKPTRYSYADIKKITNQFQDKLGEGGCGTVYKGKLSDEVHVAVKILNNSKGNGEEFINEVGTMGRIHHVNVVRLVGFCADGFRRALIYEFLPNESLEKFIFSRTTENHSLGWKKLQDIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDHNFNPKISDFGLAKLCSKEQSAVSMTSARGTMGYIAPEMLSRNFGNVSYKSDVFSYGMLLLEMVGGRKNIDITVDNTCQVYFPEWIYNHLDQGEELQIRIDEDGDTQIVKKLTIVGLWCIQWFSADRPSMKLVVQMLEGEHNLSMPPNPFTCTGPTKTNASTPERYLQQELIVISEIE* 399
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0680 398 FunFam PR5-like receptor kinase 161 367 - -
Vvi16g0680 398 Pfam Protein kinase domain 89 353 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0680 398 FunFam serine/threonine-protein kinase PBS1-like 53 160 - -
Vvi16g0680 398 SMART serkin_6 86 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0680 398 SUPERFAMILY Protein kinase-like (PK-like) 69 358 IPR011009 -
Vvi16g0680 398 PANTHER RUST RESISTANCE KINASE LR10-RELATED 57 377 IPR045874 GO:0004672
Vvi16g0680 398 Gene3D Phosphorylase Kinase; domain 1 46 160 - -
Vvi16g0680 398 Gene3D Transferase(Phosphotransferase) domain 1 161 365 - -
Vvi16g0680 398 ProSiteProfiles Protein kinase domain profile. 86 371 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0680 398 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0680 Vvi-Chr16 13821011 13822836 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0680 33 370 Receptor kinase-like Gene Family AT4G18250 48.857 6.15e-113 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0680 Pkinase 4.4e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0680 - - vvi:100249725 812.372