Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0679 ATGTTGAGAAGGATCTTACATCCTGGATTTGCAGCCCTTCTACTTCTGTTAGTCCCTATAACATGTAAAGCCAAGCGGAATCATCAGCTCTGTACCTCATCCTGCGGGAATATTCATAATATAAGCTACCCTTTCCGACTGAAAGATGATCCAGAGAGCTGCGGAGAAAGCGAGTATGAGCTGGCTTGTGAGAATAACCGCACAATCTTATACTTGTATTCAGGAAAATACAAAGTAGAAGAAATCAAGTATGAGAACTTCACAATAAGGGTTGTTGATGACTTCTCTTCTCTGCCTCTGGATTCCTGTACTTACAGAAACTTTACTCTTCAAAGTCCAATTAGATATTGGCTGTCTCATGAGAATTCGGCTCTAAATTTTATTGATTGTGAAGCTCCAATAAATTTGGAGGTCTGGGTCTCAACTTGTGGGCAGAAGATTGACGATAGTTCTTGTTCAGGCATCCATGATGGGCTGCGATATGGGACTGGCCTTCATTGGTGCAAGTGTCTCTCCTCCGTGTGCCCTCGTTGCGTTGCTATTGTTGCTGTGAGAGCTTTGCTCGGGAGTCCATGTGTTCTGATATTTTTGATCTACAAATGGAGAAGGAGGAACTTATCCATGTACCATGCCATTGAAGAGTTCATTCAAGCTCAAAATAATCTAACACCGATAAGGTACTCTTACTCAAATATTAAGAAGATGACAAAAGGTTTCAAGGAAAAACTGGGTGAAGGAGGCTATGGTTCAGTATACAAAGGAAAGCTTCGAAGTGGCCATTTGGTAGCTGTAAAAATGATGGCCAGTTCCAAAGCCAATGGACAAGATTTCATCAATGAAGTTGCTACAATTGGAAGGATTCATCATGTCAATGTCGTGCAATTAATTGGATTTTGTGTGGAGGGATCAAAGCGTGTTCTTTTATATGACTTCATGCCTAATGGGTCTCTTGATAAGTACATATTTCCTGAAAAAGAAGGAAATATCTCCTTAAGCTTAGAGAAAATGTATGAAATTTCTCTAGGAGTGGCCCATGGGATTGAATACTTACATCGAGGCTGTGACACCCAAATCTTACATTTTGATATCAAGCCCCACAATATTCTTCTTGATAAGAATTTCACTCCGAAGGTTTCAGACTTCGGCCTTGCGAAATCATATCCAATAGATCATAGTATTGTGTCCCTAACTGCAGCAAGAGGGACAATGGGATACATGGCTCCGGAGTTGTTCTACAAAAACATTGGTGGAGTCTCATACAAAGCTGACGTTTATAGTTTTGGGATGCTGTTGATGGAAATGGCAGGGAGAAGGAAAAATTTAAATGTTTTTGCAGAGCATTCAAGCCAAATTTACTTCCCTTCCTGGGTTTACGACCAGTTCAGTAAAGGAAAAGACATAGAAATGGAAGATGCAACAGAGGAAGGAAAGAAACTTTCAAAAAAGCTGATTATAGTAGCCTTATGGTGCATACAATTGAAGCCCAGTGATCGTCCTTCAATGAACAAAGTTGTGGAGATGCTTGAAGGAAATGTGGAGCTCCTGCAGATGCCTCCAAATCCTTTTCTAACTCCGCAAGAGGTGCCAGCTGAGGATCATGCAAACAACAAAAACCTAACAGAAATGTCAATTATTATCAGATAG 1644 0.4057 MLRRILHPGFAALLLLLVPITCKAKRNHQLCTSSCGNIHNISYPFRLKDDPESCGESEYELACENNRTILYLYSGKYKVEEIKYENFTIRVVDDFSSLPLDSCTYRNFTLQSPIRYWLSHENSALNFIDCEAPINLEVWVSTCGQKIDDSSCSGIHDGLRYGTGLHWCKCLSSVCPRCVAIVAVRALLGSPCVLIFLIYKWRRRNLSMYHAIEEFIQAQNNLTPIRYSYSNIKKMTKGFKEKLGEGGYGSVYKGKLRSGHLVAVKMMASSKANGQDFINEVATIGRIHHVNVVQLIGFCVEGSKRVLLYDFMPNGSLDKYIFPEKEGNISLSLEKMYEISLGVAHGIEYLHRGCDTQILHFDIKPHNILLDKNFTPKVSDFGLAKSYPIDHSIVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNVFAEHSSQIYFPSWVYDQFSKGKDIEMEDATEEGKKLSKKLIIVALWCIQLKPSDRPSMNKVVEMLEGNVELLQMPPNPFLTPQEVPAEDHANNKNLTEMSIIIR* 548
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0679 547 SUPERFAMILY Protein kinase-like (PK-like) 219 509 IPR011009 -
Vvi16g0679 547 PANTHER RUST RESISTANCE KINASE LR10-RELATED 209 528 IPR045874 GO:0004672
Vvi16g0679 547 FunFam serine/threonine-protein kinase PBS1-like 207 311 - -
Vvi16g0679 547 ProSiteProfiles Protein kinase domain profile. 237 523 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0679 547 Gene3D Transferase(Phosphotransferase) domain 1 312 516 - -
Vvi16g0679 547 FunFam PR5-like receptor kinase 312 520 - -
Vvi16g0679 547 Pfam Wall-associated receptor kinase galacturonan-binding 31 93 IPR025287 GO:0030247
Vvi16g0679 547 Pfam Protein kinase domain 240 506 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0679 547 Gene3D Phosphorylase Kinase; domain 1 201 311 - -
Vvi16g0679 547 ProSitePatterns Serine/Threonine protein kinases active-site signature. 358 370 IPR008271 GO:0004672|GO:0006468
Vvi16g0679 547 ProSitePatterns Protein kinases ATP-binding region signature. 243 265 IPR017441 GO:0005524
Vvi16g0679 547 SMART serkin_6 237 508 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0679 Vvi-Chr16 13817178 13819671 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0679 226 528 Receptor kinase-like Gene Family AT5G38280 53.055 4.21e-111 343
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0679 Pkinase 9.6e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0679 - - vvi:100254849 1070.46