Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0676 ATGGAAGATCCAATACTATGCGCCAATGGATGTGGCTTCTTTGGGACAACTGCCACTCGAAACCTATGTTCCAAGTGCTATAGAGATTTTCTCAAGGAAGAAGAAGAGTCTACGAAAACAAAAGTCATGTCCATGAAGAAAGCTATGGGGCCAAGGGTAGAGTCAACCTCATCTTTAGATGATGTTGCCACCTCCATGGCTCAACTATCTTTATCTTTGGACAATACTAAGAAGACTAGTAATGGTGATCCTTCCACAAAGATGAAGTCGGAGCAATGCGAGATGTGTAAGAAGAAGATGGGAATCATAGGATTCAAGTGCAGGTGTGGGAGTATGTTCTGTGGGAAGCATCGTTTGCCCGAAAAGCATGAATGCAACTTTGACTACAAGGCTATGGGGCGTGAGATTTTGAGGAAGCAAAACCCATCATTGAAGCCTGAGAAGTTACCAGGAAGCAATACCCCAAAGGAGAAGGAGAAGAATAGTGAGTCCTCTGCGAACAAGAGAAAGCCTGCTACTCGAAACCTATGTTCCAAGTGCTATGGAGATTATCTTAAGGAAGAAGGAGAGTCTGCGAAAGCAAAAGCCATGTCCATGGAGAAAGCTATGGGGCCAAGGGTAGAGTCAACCTCATCCTTAGATTATGTTGTCACCTCCATGGCTCAACTATCTTTATCTTCTGAGAATACTAATAAGGTTATTAATGGCGATCTTCTATGA 720 0.4333 MEDPILCANGCGFFGTTATRNLCSKCYRDFLKEEEESTKTKVMSMKKAMGPRVESTSSLDDVATSMAQLSLSLDNTKKTSNGDPSTKMKSEQCEMCKKKMGIIGFKCRCGSMFCGKHRLPEKHECNFDYKAMGREILRKQNPSLKPEKLPGSNTPKEKEKNSESSANKRKPATRNLCSKCYGDYLKEEGESAKAKAMSMEKAMGPRVESTSSLDYVVTSMAQLSLSSENTNKVINGDLL* 240
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0676 239 ProSiteProfiles Zinc finger AN1-type profile. 87 133 IPR000058 GO:0008270
Vvi16g0676 239 Gene3D - 67 149 IPR035896 -
Vvi16g0676 239 Pfam AN1-like Zinc finger 93 130 IPR000058 GO:0008270
Vvi16g0676 239 SUPERFAMILY Glucocorticoid receptor-like (DNA-binding domain) 6 46 - -
Vvi16g0676 239 FunFam Zinc finger AN1-type containing 6 67 148 - -
Vvi16g0676 239 MobiDBLite consensus disorder prediction 139 171 - -
Vvi16g0676 239 SMART AN1_Zf_4 93 130 IPR000058 GO:0008270
Vvi16g0676 239 SUPERFAMILY AN1-like Zinc finger 76 146 IPR035896 -
Vvi16g0676 239 ProSiteProfiles Zinc finger A20-type profile. 1 35 IPR002653 GO:0003677|GO:0008270
Vvi16g0676 239 SMART A20_3 4 28 IPR002653 GO:0003677|GO:0008270
Vvi16g0676 239 PANTHER AN1-TYPE ZINC FINGER PROTEIN 1 150 - -
Vvi16g0676 239 Gene3D - 1 50 - -
Vvi16g0676 239 Gene3D - 170 204 - -
Vvi16g0676 239 MobiDBLite consensus disorder prediction 151 167 - -
Vvi16g0676 239 Pfam A20-like zinc finger 5 28 IPR002653 GO:0003677|GO:0008270
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0676 Vvi-Chr16 13772824 13774725 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0676 6 149 C2H2 Transcription Factor Family AT3G52800 38.562 7.43e-28 102
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0676 - - vvi:100265156 317.005