Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0675 ATGAAGATCATCAAGCAACCTCAACCATCCAATTTCTTGAGTGATGGAACCAGAAAGCTTGTTCTTAAAAAGAGGCAAAATGGATGGATCGTTGCAACCAGAAACCTCCTTGCAATTCCATTTGTGTTGATATTCTTGATCTACAAATGGAGAAGAAGGAACCTATCCATGTATGCTGCCATTGAGGAGTTCATTCAAACTCACAATAATCTAATGCCAATCAGGTACTCTTACTCAAACATTAAGAAGATGACAAAAGGTTTCAGTGAAAAATTGGGTGAAGGAGGCTATGGTTCAGTATACAAAGGAAAGCTTCGAAGCGGCCATCTTGTGGCAGTAAAGGTGATGAATATCTCTAAAGCTAATGGGCAAGATTTTATCAATGAAGTTGCTACAATCGGAAGGATTCATCATGTCAATGTGGTGCAACTGATTGGATTTTGTGCTGAGGAATCAAAGCGTGCTCTTGTGTATGACTTCATGCCTAATGGGTCACTGGACAAGTACATATTTCCTCAGCAAGAAGATAGAATCTCCTTAAGCTATAGGAAGATGTATGAGATTTCTCTAGGAGTGGCTCATGGGATTGAATACTTACATCGGGGTTGTGATATACAAATCCTACATTTTGATATCAAGCCTCACAACATTCTGCTTGACCAGAATTTCACTCCAAAGATTTCAGACTTCGGCCTTGCAAAGTCATATCCAACAGATCATAACACTGTGTCCTTAACTGCAGCAAGAGGGACAATGGGATATATGGCCCCAGAGTTGTTCTACAAAAACATTGGGGGTGTCTCATACAAAGCTGATGTTTATAGTTATGGGATGTTATTGATGGAAATGGCAAGCAGGAGGAAGAATTTGAATGTGTTTGCAGAGAGTTTAAGCCAAATTTACTTTCCTACCTGGGTGTACGATCAACTCACTGAAGGGAAGGACATAGAAATGGAAGATACCTCAGAGGAAGAGCAGAAACTCGCAAAGAAGATGATCACGGTAGCCTTATGGTGCATACAGTTGAAGCCTAGTGACCGTCCTTCGATGAACAAAGTTGTGGAGATGCTGGAGGAAAATGTAGAACTCCTGCAAATGCCTCCAAAGCCCTTCTTAACTCCACGGGAGGTGCTAGCTGAGGATGATGGCAACACCACAAACCCAACAGAAATATCAATCAATATCAGATGA 1191 0.4114 MKIIKQPQPSNFLSDGTRKLVLKKRQNGWIVATRNLLAIPFVLIFLIYKWRRRNLSMYAAIEEFIQTHNNLMPIRYSYSNIKKMTKGFSEKLGEGGYGSVYKGKLRSGHLVAVKVMNISKANGQDFINEVATIGRIHHVNVVQLIGFCAEESKRALVYDFMPNGSLDKYIFPQQEDRISLSYRKMYEISLGVAHGIEYLHRGCDIQILHFDIKPHNILLDQNFTPKISDFGLAKSYPTDHNTVSLTAARGTMGYMAPELFYKNIGGVSYKADVYSYGMLLMEMASRRKNLNVFAESLSQIYFPTWVYDQLTEGKDIEMEDTSEEEQKLAKKMITVALWCIQLKPSDRPSMNKVVEMLEENVELLQMPPKPFLTPREVLAEDDGNTTNPTEISINIR* 397
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0675 396 Gene3D Transferase(Phosphotransferase) domain 1 161 366 - -
Vvi16g0675 396 PANTHER RUST RESISTANCE KINASE LR10-RELATED 59 376 IPR045874 GO:0004672
Vvi16g0675 396 Pfam Protein kinase domain 89 355 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0675 396 SUPERFAMILY Protein kinase-like (PK-like) 67 358 IPR011009 -
Vvi16g0675 396 ProSiteProfiles Protein kinase domain profile. 86 372 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0675 396 ProSitePatterns Protein kinases ATP-binding region signature. 92 114 IPR017441 GO:0005524
Vvi16g0675 396 FunFam serine/threonine-protein kinase PBS1-like 57 160 - -
Vvi16g0675 396 Gene3D Phosphorylase Kinase; domain 1 60 160 - -
Vvi16g0675 396 FunFam PR5-like receptor kinase 161 369 - -
Vvi16g0675 396 SMART serkin_6 86 364 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0675 396 ProSitePatterns Serine/Threonine protein kinases active-site signature. 207 219 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0675 Vvi-Chr16 13753821 13757896 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0675 75 389 Receptor kinase-like Gene Family AT5G38280 49.847 7.87e-112 340
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0675 Pkinase 7.8e-51 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0675 - - vvi:100253130 741.495