Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0674 ATGCTTCTCTCTTTTATTTGCTTCTTGTTTGTAACAATCTTTGCAGAAGTTGGAGCCACTACCAATGAGTGCGTGATATCAAGGTGCGGTCACCATGGTCCAGCCATCCGGTTCCCTTTCTGGCTTAAAGATAGCCAGCCAGACCACTGTGGGTATCCTGGGTTTCAGTTATCTTGCACAGAAAAGCATCAGACTATGATAGAGCTACCAAATTCAGTGAAGCTGTTGGTGAAGAAAATCAATTACAAATCTCAGGAAATTCAGGTCCATGATCCTGCTGATTGCCTTCCCAAACAGCTTTCAGACCTTAATTTATCAGCCTCTCCCTTCCAGTTCAAAGTCAAACATGACCACAGCCTACAGGACATAACCTTGCTCAATTGTTCCTTACCAGCTAACAGAGGCTTCATGCGACAAATCCCTTGCTCAAGTGTCCCTGGCTACCAAGTTTATGTTGTTGATTCCTACTATACCCTCTTCCATGACTATGACAACTATGACCTATTATCTTGCAGCAAGATGTATAACATTTCATCAGTCCCTAATGATATATTTGAGCATTTTTATCTGAATTGGTCGAAACCAATATGCAGAAACTGTGAAGCAGATGGTAAAAGATGCAGACTGAAGAGTAATAGCACAGAACCTGAAACTGAATGTTTCATCATCAGCAAAAAAGCTCAAGGTCCTATGGTTGGTTCCTTTCTTCTTGTGCTGGTAGTCATTATGTTCTACCGTGTTCATTGCACAAATAAATTACAAAGAGAGAATCAAATAAAGATTGAAAAGTTTTTGGAAGATTACAGAGCTCTCAAGCCCTCTAGATACTCTTTCGCTGATATTAAGAAGATAACAAATCAATTTCAGGATAAATTGGGCCAAGGAGGCTATGGAACTGTGTACAAAGGAAAGCTTTCCAATGAAGTTCTTGTTGCAGTAAAGATTCTTAGCAATTCCAAGGGAAATGGGGAAGAATTCATCAATGAAGTGAGAACAATGGGCAGAATCCACCATGTCAATGTTGTTCGCTTGGTCGGCTTTTGTGCCGATGGATTTAGTCGAGCACTTATTTATGAGTTCTTACCAAATGAATCCCTGGAGAAGTTCATATTTTCAACCACCATTAAGAACCGTTCACTTGGTTGGAAGAAGCTTCAAGATATTGCTCTGGGCATAGCCAAAGGAATTGAGTATCTTCACCAAGGTTGTGATCAGAGAATCCTTCATTTTGATATCAAGCCTCATAATATTCTTCTAGATCATCACCTCAACCCAAAGATATCTGATTTTGGTCTGGCAAAATTGTGTTCCAAGGAGCAAAGTACAGTTTCTATGACGGCTGCTCGAGGGACCATGGGCTATATTGCCCCAGAAGTATTATCTAGAAATTTTGGGCATGTGTCCTACAAGTCAGATGTTTTTAGTTTTGGGATGCTGTTGCTTGAAATGGTAGGCGGAAGGAAGAATATTGATGTTACAGTGGACAACACCAGCCAATTATATTTCCCAGAATGGGCATATAATCATTTGGATCAGGGAGAAGAGTTGCATATCCGGATTGAAAAAGAGGGAGATGATAAAATAGCAAAGCAATTAACAATTGTGGGACTTTGGTGCATTCAATGGTACCCTATGGATCGTCCTCCCATGAAAGCTGTGGTTCAAATGCTGGAAGGAGAAGGAGACAGTTTAACCATGCCCCCTAATCCCTTTGCCTCCACAAGCCCAACATGA 1734 0.4089 MLLSFICFLFVTIFAEVGATTNECVISRCGHHGPAIRFPFWLKDSQPDHCGYPGFQLSCTEKHQTMIELPNSVKLLVKKINYKSQEIQVHDPADCLPKQLSDLNLSASPFQFKVKHDHSLQDITLLNCSLPANRGFMRQIPCSSVPGYQVYVVDSYYTLFHDYDNYDLLSCSKMYNISSVPNDIFEHFYLNWSKPICRNCEADGKRCRLKSNSTEPETECFIISKKAQGPMVGSFLLVLVVIMFYRVHCTNKLQRENQIKIEKFLEDYRALKPSRYSFADIKKITNQFQDKLGQGGYGTVYKGKLSNEVLVAVKILSNSKGNGEEFINEVRTMGRIHHVNVVRLVGFCADGFSRALIYEFLPNESLEKFIFSTTIKNRSLGWKKLQDIALGIAKGIEYLHQGCDQRILHFDIKPHNILLDHHLNPKISDFGLAKLCSKEQSTVSMTAARGTMGYIAPEVLSRNFGHVSYKSDVFSFGMLLLEMVGGRKNIDVTVDNTSQLYFPEWAYNHLDQGEELHIRIEKEGDDKIAKQLTIVGLWCIQWYPMDRPPMKAVVQMLEGEGDSLTMPPNPFASTSPT* 578
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0674 577 ProSitePatterns Protein kinases ATP-binding region signature. 292 314 IPR017441 GO:0005524
Vvi16g0674 577 SMART serkin_6 286 557 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0674 577 CDD STKc_IRAK 292 559 - -
Vvi16g0674 577 FunFam PR5-like receptor kinase 361 568 - -
Vvi16g0674 577 FunFam serine/threonine-protein kinase PBS1-like 254 360 - -
Vvi16g0674 577 ProSitePatterns Serine/Threonine protein kinases active-site signature. 407 419 IPR008271 GO:0004672|GO:0006468
Vvi16g0674 577 Gene3D Transferase(Phosphotransferase) domain 1 361 564 - -
Vvi16g0674 577 Pfam Protein kinase domain 289 555 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0674 577 SUPERFAMILY Protein kinase-like (PK-like) 271 558 IPR011009 -
Vvi16g0674 577 PANTHER RUST RESISTANCE KINASE LR10-RELATED 255 571 IPR045874 GO:0004672
Vvi16g0674 577 Pfam Wall-associated receptor kinase galacturonan-binding 28 91 IPR025287 GO:0030247
Vvi16g0674 577 Gene3D Phosphorylase Kinase; domain 1 254 360 - -
Vvi16g0674 577 ProSiteProfiles Protein kinase domain profile. 286 572 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0674 Vvi-Chr16 13741409 13743620 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0674 1 577 Receptor kinase-like Gene Family AT1G66910 36.000 2.65e-115 355
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0674 Pkinase 4.1e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0674 - - vvi:100258260 1184.47