Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0673 ATGTCGATGAAGCTTTTATTTAACAATTTCACAGCCCTGGTTCTACTACTACTCTCTGCAACAAGTGAAGCTTGCCACTCTTCTTGTGGCAAATTGGGTAACATAACTTACCCTTTCCGACTGAAAGGTGATCAGCATAGCTGTGGGAAGGTCAACTATGAACTGGATTGTGAGAATAATCATACAATCTTGCACTTATACTCTGGAAAATACCATGTAGAAGAAATCAATTATGATACCTTCACAATGAGGGTTGTTGATGTTGGTCTACAGAAAGATAATTGTTCTTCTTTGCCTCTTCAGTCTTTGATGCATGGAAATTTTAGCCATGGGGATCCATATGAGCTGTCAGCTTTCAATTCAGCCGTAAATTTCCTGGAGTGTGCAGCTCCAGTGAAGTCTGCCCCCTACCTGGATACAGCACTTTGCAGTAAAAACAGTTCTTCCAACCTCTCTTTATCTTTATCGCAAACACATTCTTATGTTGTAGTTGGTGACATAAGAGCATCAGATGTGGAGGACTCTTGCAGTATTGGCATGGTGGTTTGGGTTTCTAATAGCCACCTGAAGATCAACAACAGTTCCTTTTCAGGCATCCACAATGGGCTGCTATATGGGACTGAGCTTTTATGGCCTCGTATTTGCTACCTTGATTATGTCCTTTGGAAAGTACAACTGCCGTGTGCTTTGTTGGATCCATTTTATTTCTCTGCGAAATATGGTGGCCCTTACTTTGAGCTTAATATTGCACTGAGATGTTGTGGGATTCCATGTGTGTTTGTGTTCTTGATCTATAAATGGCGAAGAAGGAATTTGTGGATCTACAGTGACATTGAAGAGTTCATTCAAAGTCACAACAACCTAATGCCAATTAGGTACTCTTACTCAAACATTAAGAAGATGACAAAAAATTTCAAGGAAAAATTGGGTGAAGGAGGTTTTGGTTCAGTGTTTAAAGGAAAGCTTCAAAGTGGCCGTCTTGTAGCTGTAAAGATGGTCAATTCCAAAGCCAATGGACAGGATTTTATCAATGAAGTTGCTACAATTGGAAGGATCCATCATGTCAATGTGGTCCAACTAATTGGATTCTGTGCCAAGGGATCGAAGCGTGCTCTTGTATTTGACTTCATGCCCAATGGGTCTCTGGACAAGTACATATTCCCTCGAACAGAAGCAAATATCTCTTTGAACTTTGAGAAAATGTATGAGATTTCTCTAGGAGTGGCTCATGGGATTGAATACTTACACCGAGGTTGTGATATGCAAATCCTACATTTTGACATCAAGCCTCACAACATTCTGCTTGATAAGAATTTCAGTCCAAAGGTTTCAGACTTTGGCCTTGCAAAACTGTATCCAACAGATCATAGCATTGTGTCTGTAACTGCAGCAAGAGGGACAATGGGATATATGGCTCCAGAGTTGGTTTACAAAAACATTGGGGGAGTCTCATACAAAGCTGATGTTTATAGTTTTGGAATGTTGTTGATGGAAATGGCAGGCAGAAGGAAGAATTTGAATGTGTTTGCAGAGCATTCCAGCCAAATGTACTTTCCTTCTTGGGTGTACGACCAGTTCTCTGAAGGAAAGGACATAGAAATGGGAGATGCCACAGAGGAAGAGCAGAAACTTGCAAAGAAGATGATCATAGTGGCCTTATGGTGCATACAGCTGAAGCCGAGTGATCGACCTTCAATGAGCAAAGTGGTAGAGATGCTAGAGGGGAATGTAGAACTCCTGCAAATGCCTCCAAAGCCCTTCTTAACTCCACAAGAGGTGCCAGCTGAGGACCATTGA 1797 0.414 MSMKLLFNNFTALVLLLLSATSEACHSSCGKLGNITYPFRLKGDQHSCGKVNYELDCENNHTILHLYSGKYHVEEINYDTFTMRVVDVGLQKDNCSSLPLQSLMHGNFSHGDPYELSAFNSAVNFLECAAPVKSAPYLDTALCSKNSSSNLSLSLSQTHSYVVVGDIRASDVEDSCSIGMVVWVSNSHLKINNSSFSGIHNGLLYGTELLWPRICYLDYVLWKVQLPCALLDPFYFSAKYGGPYFELNIALRCCGIPCVFVFLIYKWRRRNLWIYSDIEEFIQSHNNLMPIRYSYSNIKKMTKNFKEKLGEGGFGSVFKGKLQSGRLVAVKMVNSKANGQDFINEVATIGRIHHVNVVQLIGFCAKGSKRALVFDFMPNGSLDKYIFPRTEANISLNFEKMYEISLGVAHGIEYLHRGCDMQILHFDIKPHNILLDKNFSPKVSDFGLAKLYPTDHSIVSVTAARGTMGYMAPELVYKNIGGVSYKADVYSFGMLLMEMAGRRKNLNVFAEHSSQMYFPSWVYDQFSEGKDIEMGDATEEEQKLAKKMIIVALWCIQLKPSDRPSMSKVVEMLEGNVELLQMPPKPFLTPQEVPAEDH* 599
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0673 598 SMART serkin_6 303 573 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0673 598 SUPERFAMILY Protein kinase-like (PK-like) 283 574 IPR011009 -
Vvi16g0673 598 FunFam serine/threonine-protein kinase PBS1-like 275 376 - -
Vvi16g0673 598 FunFam PR5-like receptor kinase 377 585 - -
Vvi16g0673 598 ProSiteProfiles Protein kinase domain profile. 303 588 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0673 598 ProSitePatterns Serine/Threonine protein kinases active-site signature. 423 435 IPR008271 GO:0004672|GO:0006468
Vvi16g0673 598 PANTHER RUST RESISTANCE KINASE LR10-RELATED 275 589 IPR045874 GO:0004672
Vvi16g0673 598 Pfam Wall-associated receptor kinase galacturonan-binding 25 87 IPR025287 GO:0030247
Vvi16g0673 598 Gene3D Transferase(Phosphotransferase) domain 1 377 581 - -
Vvi16g0673 598 Gene3D Phosphorylase Kinase; domain 1 278 376 - -
Vvi16g0673 598 Pfam Protein kinase domain 305 571 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0673 598 ProSitePatterns Protein kinases ATP-binding region signature. 309 331 IPR017441 GO:0005524
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0673 Vvi-Chr16 13733026 13735779 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0673 292 593 Receptor kinase-like Gene Family AT5G38280 53.698 1.93e-111 346
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0673 Pkinase 1.3e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0673 - - vvi:100263570 1195.26