Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0672 ATGGGATTCTTTTATGAAAATGAACCTGGAAGGCCAAAAGAAGGGATAAGAAGAGCAAGCAAGAGAACATCAAGAAAACTAGCGTTGCAGGTGAAATTTTCTATGCTCCTTCATTTTAAAGAATATGGGGACAATGGTTCTCAACTTGATTTCTTCTTCATTTTTAAGAATAAGGAGACAAGGATTCTCAAATTGGTTTCTCTATGTGCAGGTGCAATTCTTGGTTTCTTTCTTCTTGTGCTAGTGGTCATTGCATTATACTGGGTCTATAGCTCGGATAAAATAGAAAAGGAGAATCAATTAAAGATTGAGAAGTTTTTGGAGGACTATAGAGCTCTAAAGCCCTCTAGATACTCTTATGCTGATATTAAGAAAATTACAAATCAATTTAAGGACAAGTTGGGCCAAGGAGGTTATGGAACCGTATACAAAGGAAAGCTTTCCAATGAAATTCTTGTTGCAGTTAAGATCCTAAACAATTCTACAGGCAATGGGGAAGAGTTTATTAATGAAGTGGGAACAATGGGTAGAATCCACCACGTCAATGTGGTTCGCTTGGTAGGCTTCTGTGCTGATGGATTGAGGCGAGCCCTCATTTATGAGTTCTTACCAAATGAATCACTGGAGAAGTTCATATTCTCAGCTGCTATGAAGAACCAGTCACTTGGTTGGGAGAAGCTTCGAGATATTGCTCTAGGCATAGCCAAGGGAATTGAGTACCTTCACCAAGGGTGTGCCCAAAGAATCCTCCATTTTGACATAAAACCTCATAATATTTTGCTAGATCAGAATTTGAATCCAAAGATCTCCGATTTTGGTTTGGCCAAATTGTGCTCCAAGGAAAAAAGTGTGGTTTCTATGTCTGCAGCTAGAGGAACAATGGGCTATATTGCACCCGAAGTATTATCTAGAAATTTTGGGAATGTCTCCCATAAGTCAGATGTTTATAGTTTTGGAATGTTGTTACTTGAAATGGTAGGAGGGAGGAGGAACATTGATGTTACTGTGGAAAACACCAGCCAAGTATACTTCCCAGAATGGGTCTATAATCATTTGGATCAAGGAGAAGAATTGCATATCCGAATTGAGAAAGAAGGAGATGCTAAAATGGCAAAGCAACTAACTATAGTGGGGCTTTGGTGCATTCAGTGGTACCCAAAGGATCGTCCTTCCATGAAAGTTGTGGTTCAGATGTTGGAAGGAGAGGGAGACAATCTAACCATGCCATCTAATCCTTTCATCTCCATGGGTCCAACAAGAACAAATGGGCGCAGGCTTGAAAGACCTCTTCAACAAGAGCTAGCAGTCATCTCAGAATTAGAGTGA 1326 0.3989 MGFFYENEPGRPKEGIRRASKRTSRKLALQVKFSMLLHFKEYGDNGSQLDFFFIFKNKETRILKLVSLCAGAILGFFLLVLVVIALYWVYSSDKIEKENQLKIEKFLEDYRALKPSRYSYADIKKITNQFKDKLGQGGYGTVYKGKLSNEILVAVKILNNSTGNGEEFINEVGTMGRIHHVNVVRLVGFCADGLRRALIYEFLPNESLEKFIFSAAMKNQSLGWEKLRDIALGIAKGIEYLHQGCAQRILHFDIKPHNILLDQNLNPKISDFGLAKLCSKEKSVVSMSAARGTMGYIAPEVLSRNFGNVSHKSDVYSFGMLLLEMVGGRRNIDVTVENTSQVYFPEWVYNHLDQGEELHIRIEKEGDAKMAKQLTIVGLWCIQWYPKDRPSMKVVVQMLEGEGDNLTMPSNPFISMGPTRTNGRRLERPLQQELAVISELE* 442
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0672 441 Gene3D Phosphorylase Kinase; domain 1 102 202 - -
Vvi16g0672 441 FunFam serine/threonine-protein kinase PBS1-like 95 202 - -
Vvi16g0672 441 CDD STKc_IRAK 134 401 - -
Vvi16g0672 441 PANTHER RUST RESISTANCE KINASE LR10-RELATED 99 417 IPR045874 GO:0004672
Vvi16g0672 441 ProSitePatterns Serine/Threonine protein kinases active-site signature. 249 261 IPR008271 GO:0004672|GO:0006468
Vvi16g0672 441 ProSiteProfiles Protein kinase domain profile. 128 414 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0672 441 Pfam Protein kinase domain 130 397 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vvi16g0672 441 SUPERFAMILY Protein kinase-like (PK-like) 112 400 IPR011009 -
Vvi16g0672 441 Gene3D Transferase(Phosphotransferase) domain 1 203 408 - -
Vvi16g0672 441 ProSitePatterns Protein kinases ATP-binding region signature. 134 156 IPR017441 GO:0005524
Vvi16g0672 441 FunFam PR5-like receptor kinase 203 410 - -
Vvi16g0672 441 SMART serkin_6 128 399 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0672 Vvi-Chr16 13726172 13727636 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0672 108 421 Receptor kinase-like Gene Family AT1G66910 52.188 2.38e-113 345
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRK10L-2 Vvi16g0672 Pkinase 9.9e-49 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0672 - - vvi:100241305 735.717