Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0659 ATGAAACCAACAAAGCCTGGGTTGGAGGAACCCCAGGAGGCTATTCATAAGATCAGGATCACCTTGTCCTCCAAGAATGTCAAGAACCTTGAGAAAGTGTGCGCTGATTTGGTTCGTGGTGCCAAGGACAAGAGGTTGAGGGTCAAGGGACCTGTGAGAATGCCCACCAAGGTTCTTCACATCACTACCAGGAAATCTCCCTGTGGTGAAGGAACCAACACTTGGGACAGATTTGAGCTTCGTGTTCACAAGCGAGTGATTGATCTCTTCAGCTCTCCAGATGTAGTTAAGCAGATCACCTCCATCACAATTGAACCCGGTGTGGAGGTTGAGGTTACTATTGCAGATTCTTAA 354 0.4774 MKPTKPGLEEPQEAIHKIRITLSSKNVKNLEKVCADLVRGAKDKRLRVKGPVRMPTKVLHITTRKSPCGEGTNTWDRFELRVHKRVIDLFSSPDVVKQITSITIEPGVEVEVTIADS* 118
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0659 117 Pfam Ribosomal protein S10p/S20e 19 113 IPR027486 -
Vvi16g0659 117 PANTHER 30S RIBOSOMAL PROTEIN S10 FAMILY MEMBER 10 116 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi16g0659 117 Gene3D Ribosomal protein S10 domain 3 116 IPR036838 -
Vvi16g0659 117 PRINTS Ribosomal protein S10 family signature 52 67 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi16g0659 117 PRINTS Ribosomal protein S10 family signature 17 30 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi16g0659 117 PRINTS Ribosomal protein S10 family signature 74 88 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi16g0659 117 SUPERFAMILY Ribosomal protein S10 17 114 IPR036838 -
Vvi16g0659 117 ProSitePatterns Ribosomal protein S10 signature. 41 56 IPR018268 GO:0003723|GO:0003735|GO:0005840|GO:0006412
Vvi16g0659 117 SMART Ribosomal_S10_2 19 113 IPR027486 -
Vvi16g0659 117 FunFam 40S ribosomal protein S20 2 116 - -
Vvi16g0659 117 Hamap 30S ribosomal protein S10 [rpsJ]. 15 114 IPR001848 GO:0003735|GO:0005840|GO:0006412
Vvi16g0659 117 NCBIfam 30S ribosomal protein S10 16 114 IPR005729 GO:0003735|GO:0006412|GO:0015935
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0659 1 117 Cytoplasmic Ribosomal Protein Gene Family AT3G47370 94.017 5.23e-77 221
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0659 K02969 - vvi:100258347 235.728