Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi16g0646 ATGGCAGAAAGCAGTATTGTGTTTTTCCTAATGAAGTTGGGCAAATTGGTAGCGCAAGAAGCTAAACTTTTTAGAGAAGTTGAAGGGCAGATAAGCGTGTTGAGTAACGAGCTTGAATGGATTCGTCTCTTCCTTGAAGAAGCAGGTGGCAAACGCACTTACAACAAAAGACTCAAGCTTTGGATGAATCAGATTAGAGACGCAGCCTATGATGCAGAAGACATAATCGACGACTTCATGTTCGAGCTGGAACGCCCGCGCCAGCACAGACTCAATCATCTCAAGTTCCTCAGGTGCTTACCCACAAGCGTTAGCTTTGCTGACAAGTTAACATTGGTCCACGAGCTCCATGGCCGTATCAAAGAGATCAATGTCAAAATTGAGAAGACCTTAGCTAATAAATCGAGGTGCGGTATCAAAAATCCAAGCAGTACTACTTCTGAAGCTTGGAAATGGAAATCTTCCAGTGAAGTCGTGCTGCAGGAAGAGAAGAAGAGGAGCCCAATTGTTGAAGAAATCAACCCAGTGGGAATGGAAGATAGCGTGGAAGAAGTGAAGCAAATGATCGTTGAGGAAGAGTCATCGGGAACAACAACAACAAGAAGAGTGGTGTCCATTGTGGGGATGGGCGGTCTTGGAAAAACAACTCTTGCTCAAAGAGTTTATAATCACAGTGATGTTAAGAACCACTTTGATTATGTTACTTGGGTTTATGTGTCTCAAGATTGCAGAATCAAAGAGCTTTTGGTCGAGATCGCCAATGATTGCAAGCCTGATCGTGATGAAGAAAGAAAAATATCAAAGAAACCGCCGAGAGAAGTTATTAAAGAATTTCTCGAGGAAAAGAAGTACTTGGTAGTACTGGACGATATATGGAGCATCAAAGTTCGGGATGAGTTGATCTCATGTTTTCCAGAATCAAGAAATGGCAAAGTGCTTATCACTACTCGCAATCAGGAGATCGCTTCACATGCCAATTCACAGCTCTACAAACTTCGTCTACTAAATAAAACAGAAAGTTGGGACCTTTTCCTCAAAAAAATTGTAGTCCCTGCAGAATTGGAAGATTTGGGAAAGAAGATGACAGCAAAATGTCATGGGCTGCCTCTTGCCATTGTGGCGTTGGGAAGCCTTCTATCAAGAAAAGACAAGACAACTTCATCATGGAGGAAAGTACTTGAAAGCTTGGAGTGGCATCTAAATCAAGGCCCGGAGTCATGTTTTGGAATTCTTGCTTTAAGTTACAATGACTTGCCTTATTACTTGAAGTCTTGTTTTCTGTATTGCGGTCTTTTTCTCGAAGATTCAGAGATCAAGGTCAGTAAATTGTTCCAAATGTGGATTGCAGAGGGCTTCGTGCAAAGACGGGGTGAAGAAAAGGTAGAAAAAGTTGCTGAAGATTACTTGGAAGAACTGATCAACAGAAGCATGATTCGAGTGGTGAAACGGAAGTCAAACGGAGGAATAAAGTCTTGTCACATTCATGGTCTTCTTCGAGATCTTGCCATTTCTGAAGCCAAAGATTCAAAATTTTTTGAGGTATACGAAAACACCGATTATACATCCCCCATCAGTGTTCGCCGACTTACAATTCCTCACAAGAAAGAAATTGTGCACCATATTAATAGTTCCCGCCTTCGATCTTTGATTGGTTTCGTTGGTGAAGACAGTTTAACATCTTGTCTGGCACCCAAATTGCTCACAGTGTTAGACGTAGAACTGTCTACGAAACTAAAGATCACACTCCCAAAGGAAATAGGTGAACTTATCCGTTTGAAGTACATGCGTTTACGGGGTGGTCATGGATTAAGGCTTCCAGAGTCCATAGGTAGACTTGTTAATCTACAGACATTGGACTGTCGATTCGGTAAGATTCCCTGGAGCGTTTGGAGACTGCACCAATTGAGACATTTATATGGTTATTATAGTACCGTTTTAAGCCGGCCAATGATGAGTAGATGCCTTACATTTAATGGTGATTTGAGTATTCATCTGCTTACCAACCTTCAAACATTGAAGTTGGCTCCGGGTCCTTGGTTGGAGGATGGTTTGGGAAAGCTACCCCAGCTTAAGAAACTAAGAATAACTGACGGACGCTTCAAGAATTCCAGTGAATTATATCCTGAAAACCTCATGAAACTAACCTTGCAGAATTGTGATCTAGAGGAGGACCCAATGCTGACACTAAAGAAGCTGCCAAACTTGAGAATTCTTAAGCTAATGGGTAATTCCTGTGGAAGCAAAATGGTCTGCTCTTCTGGAGGGTTCCTTCAACTCGAAGTCTTGGGGTTGCATTGGTTGAAGAAACTGGAGGAATTGAAAGTGGAGGAAGGTGCATTGCCTAACTTAAGGGCTTTGCAAATTAGAGGTAAAATAATGATAAAGGTTCCTCAAGGATTATTGCAGTTGGAAAATCTTCGGGAACTAAAGCTGAAGCGTGTAAGCTCTCAATTAATCGAAGAGGTGCATGAGGGTAAGGGAGAAGATTGGGATAAACTCAGGCGCATTACCTACATTGAAAAGTAA 2526 0.4188 MAESSIVFFLMKLGKLVAQEAKLFREVEGQISVLSNELEWIRLFLEEAGGKRTYNKRLKLWMNQIRDAAYDAEDIIDDFMFELERPRQHRLNHLKFLRCLPTSVSFADKLTLVHELHGRIKEINVKIEKTLANKSRCGIKNPSSTTSEAWKWKSSSEVVLQEEKKRSPIVEEINPVGMEDSVEEVKQMIVEEESSGTTTTRRVVSIVGMGGLGKTTLAQRVYNHSDVKNHFDYVTWVYVSQDCRIKELLVEIANDCKPDRDEERKISKKPPREVIKEFLEEKKYLVVLDDIWSIKVRDELISCFPESRNGKVLITTRNQEIASHANSQLYKLRLLNKTESWDLFLKKIVVPAELEDLGKKMTAKCHGLPLAIVALGSLLSRKDKTTSSWRKVLESLEWHLNQGPESCFGILALSYNDLPYYLKSCFLYCGLFLEDSEIKVSKLFQMWIAEGFVQRRGEEKVEKVAEDYLEELINRSMIRVVKRKSNGGIKSCHIHGLLRDLAISEAKDSKFFEVYENTDYTSPISVRRLTIPHKKEIVHHINSSRLRSLIGFVGEDSLTSCLAPKLLTVLDVELSTKLKITLPKEIGELIRLKYMRLRGGHGLRLPESIGRLVNLQTLDCRFGKIPWSVWRLHQLRHLYGYYSTVLSRPMMSRCLTFNGDLSIHLLTNLQTLKLAPGPWLEDGLGKLPQLKKLRITDGRFKNSSELYPENLMKLTLQNCDLEEDPMLTLKKLPNLRILKLMGNSCGSKMVCSSGGFLQLEVLGLHWLKKLEELKVEEGALPNLRALQIRGKIMIKVPQGLLQLENLRELKLKRVSSQLIEEVHEGKGEDWDKLRRITYIEK* 842
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi16g0646 841 Gene3D - 334 414 IPR042197 -
Vvi16g0646 841 Pfam Rx N-terminal domain 8 88 IPR041118 -
Vvi16g0646 841 FunFam Probable disease resistance protein At1g61300 159 328 - -
Vvi16g0646 841 CDD RX-CC_like 2 129 IPR038005 -
Vvi16g0646 841 Pfam NB-ARC domain 179 415 IPR002182 GO:0043531
Vvi16g0646 841 Gene3D - 5 116 - -
Vvi16g0646 841 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 166 429 IPR027417 -
Vvi16g0646 841 PANTHER DISEASE RESISTANCE PROTEIN RP 43 811 IPR044974 GO:0006952
Vvi16g0646 841 Gene3D - 156 332 IPR027417 -
Vvi16g0646 841 Gene3D - 415 505 IPR036388 -
Vvi16g0646 841 SUPERFAMILY L domain-like 560 814 - -
Vvi16g0646 841 Gene3D Ribonuclease Inhibitor 528 838 IPR032675 -
Vvi16g0646 841 FunFam Probable disease resistance protein At1g63360 415 504 - -
Vvi16g0646 841 PRINTS Disease resistance protein signature 365 379 - -
Vvi16g0646 841 PRINTS Disease resistance protein signature 278 292 - -
Vvi16g0646 841 PRINTS Disease resistance protein signature 801 817 - -
Vvi16g0646 841 PRINTS Disease resistance protein signature 203 218 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi16g0646 Vvi-Chr16 13303364 13305889 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi16g0646 202 510 WRKY Transcription Factor Family AT5G45050 25.298 1.07e-06 50.8
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi16g0646 - - vvi:100254147 1625.91