LGRPv2

Gene search

Sequence information

Show entries

Search:

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Vvi16g0646	ATGGCAGAAAGCAGTATTGTGTTTTTCCTAATGAAGTTGGGCAAATTGGTAGCGCAAGAAGCTAAACTTTTTAGAGAAGTTGAAGGGCAGATAAGCGTGTTGAGTAACGAGCTTGAATGGATTCGTCTCTTCCTTGAAGAAGCAGGTGGCAAACGCACTTACAACAAAAGACTCAAGCTTTGGATGAATCAGATTAGAGACGCAGCCTATGATGCAGAAGACATAATCGACGACTTCATGTTCGAGCTGGAACGCCCGCGCCAGCACAGACTCAATCATCTCAAGTTCCTCAGGTGCTTACCCACAAGCGTTAGCTTTGCTGACAAGTTAACATTGGTCCACGAGCTCCATGGCCGTATCAAAGAGATCAATGTCAAAATTGAGAAGACCTTAGCTAATAAATCGAGGTGCGGTATCAAAAATCCAAGCAGTACTACTTCTGAAGCTTGGAAATGGAAATCTTCCAGTGAAGTCGTGCTGCAGGAAGAGAAGAAGAGGAGCCCAATTGTTGAAGAAATCAACCCAGTGGGAATGGAAGATAGCGTGGAAGAAGTGAAGCAAATGATCGTTGAGGAAGAGTCATCGGGAACAACAACAACAAGAAGAGTGGTGTCCATTGTGGGGATGGGCGGTCTTGGAAAAACAACTCTTGCTCAAAGAGTTTATAATCACAGTGATGTTAAGAACCACTTTGATTATGTTACTTGGGTTTATGTGTCTCAAGATTGCAGAATCAAAGAGCTTTTGGTCGAGATCGCCAATGATTGCAAGCCTGATCGTGATGAAGAAAGAAAAATATCAAAGAAACCGCCGAGAGAAGTTATTAAAGAATTTCTCGAGGAAAAGAAGTACTTGGTAGTACTGGACGATATATGGAGCATCAAAGTTCGGGATGAGTTGATCTCATGTTTTCCAGAATCAAGAAATGGCAAAGTGCTTATCACTACTCGCAATCAGGAGATCGCTTCACATGCCAATTCACAGCTCTACAAACTTCGTCTACTAAATAAAACAGAAAGTTGGGACCTTTTCCTCAAAAAAATTGTAGTCCCTGCAGAATTGGAAGATTTGGGAAAGAAGATGACAGCAAAATGTCATGGGCTGCCTCTTGCCATTGTGGCGTTGGGAAGCCTTCTATCAAGAAAAGACAAGACAACTTCATCATGGAGGAAAGTACTTGAAAGCTTGGAGTGGCATCTAAATCAAGGCCCGGAGTCATGTTTTGGAATTCTTGCTTTAAGTTACAATGACTTGCCTTATTACTTGAAGTCTTGTTTTCTGTATTGCGGTCTTTTTCTCGAAGATTCAGAGATCAAGGTCAGTAAATTGTTCCAAATGTGGATTGCAGAGGGCTTCGTGCAAAGACGGGGTGAAGAAAAGGTAGAAAAAGTTGCTGAAGATTACTTGGAAGAACTGATCAACAGAAGCATGATTCGAGTGGTGAAACGGAAGTCAAACGGAGGAATAAAGTCTTGTCACATTCATGGTCTTCTTCGAGATCTTGCCATTTCTGAAGCCAAAGATTCAAAATTTTTTGAGGTATACGAAAACACCGATTATACATCCCCCATCAGTGTTCGCCGACTTACAATTCCTCACAAGAAAGAAATTGTGCACCATATTAATAGTTCCCGCCTTCGATCTTTGATTGGTTTCGTTGGTGAAGACAGTTTAACATCTTGTCTGGCACCCAAATTGCTCACAGTGTTAGACGTAGAACTGTCTACGAAACTAAAGATCACACTCCCAAAGGAAATAGGTGAACTTATCCGTTTGAAGTACATGCGTTTACGGGGTGGTCATGGATTAAGGCTTCCAGAGTCCATAGGTAGACTTGTTAATCTACAGACATTGGACTGTCGATTCGGTAAGATTCCCTGGAGCGTTTGGAGACTGCACCAATTGAGACATTTATATGGTTATTATAGTACCGTTTTAAGCCGGCCAATGATGAGTAGATGCCTTACATTTAATGGTGATTTGAGTATTCATCTGCTTACCAACCTTCAAACATTGAAGTTGGCTCCGGGTCCTTGGTTGGAGGATGGTTTGGGAAAGCTACCCCAGCTTAAGAAACTAAGAATAACTGACGGACGCTTCAAGAATTCCAGTGAATTATATCCTGAAAACCTCATGAAACTAACCTTGCAGAATTGTGATCTAGAGGAGGACCCAATGCTGACACTAAAGAAGCTGCCAAACTTGAGAATTCTTAAGCTAATGGGTAATTCCTGTGGAAGCAAAATGGTCTGCTCTTCTGGAGGGTTCCTTCAACTCGAAGTCTTGGGGTTGCATTGGTTGAAGAAACTGGAGGAATTGAAAGTGGAGGAAGGTGCATTGCCTAACTTAAGGGCTTTGCAAATTAGAGGTAAAATAATGATAAAGGTTCCTCAAGGATTATTGCAGTTGGAAAATCTTCGGGAACTAAAGCTGAAGCGTGTAAGCTCTCAATTAATCGAAGAGGTGCATGAGGGTAAGGGAGAAGATTGGGATAAACTCAGGCGCATTACCTACATTGAAAAGTAA	2526	0.4188	MAESSIVFFLMKLGKLVAQEAKLFREVEGQISVLSNELEWIRLFLEEAGGKRTYNKRLKLWMNQIRDAAYDAEDIIDDFMFELERPRQHRLNHLKFLRCLPTSVSFADKLTLVHELHGRIKEINVKIEKTLANKSRCGIKNPSSTTSEAWKWKSSSEVVLQEEKKRSPIVEEINPVGMEDSVEEVKQMIVEEESSGTTTTRRVVSIVGMGGLGKTTLAQRVYNHSDVKNHFDYVTWVYVSQDCRIKELLVEIANDCKPDRDEERKISKKPPREVIKEFLEEKKYLVVLDDIWSIKVRDELISCFPESRNGKVLITTRNQEIASHANSQLYKLRLLNKTESWDLFLKKIVVPAELEDLGKKMTAKCHGLPLAIVALGSLLSRKDKTTSSWRKVLESLEWHLNQGPESCFGILALSYNDLPYYLKSCFLYCGLFLEDSEIKVSKLFQMWIAEGFVQRRGEEKVEKVAEDYLEELINRSMIRVVKRKSNGGIKSCHIHGLLRDLAISEAKDSKFFEVYENTDYTSPISVRRLTIPHKKEIVHHINSSRLRSLIGFVGEDSLTSCLAPKLLTVLDVELSTKLKITLPKEIGELIRLKYMRLRGGHGLRLPESIGRLVNLQTLDCRFGKIPWSVWRLHQLRHLYGYYSTVLSRPMMSRCLTFNGDLSIHLLTNLQTLKLAPGPWLEDGLGKLPQLKKLRITDGRFKNSSELYPENLMKLTLQNCDLEEDPMLTLKKLPNLRILKLMGNSCGSKMVCSSGGFLQLEVLGLHWLKKLEELKVEEGALPNLRALQIRGKIMIKVPQGLLQLENLRELKLKRVSSQLIEEVHEGKGEDWDKLRRITYIEK*	842

Showing 1 to 1 of 1 entries

Annotation information

Show entries

Search:

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Vvi16g0646	841	Gene3D	-	334	414	IPR042197	-
	Vvi16g0646	841	Pfam	Rx N-terminal domain	8	88	IPR041118	-
	Vvi16g0646	841	FunFam	Probable disease resistance protein At1g61300	159	328	-	-
	Vvi16g0646	841	CDD	RX-CC_like	2	129	IPR038005	-
	Vvi16g0646	841	Pfam	NB-ARC domain	179	415	IPR002182	GO:0043531
	Vvi16g0646	841	Gene3D	-	5	116	-	-
	Vvi16g0646	841	SUPERFAMILY	P-loop containing nucleoside triphosphate hydrolases	166	429	IPR027417	-
	Vvi16g0646	841	PANTHER	DISEASE RESISTANCE PROTEIN RP	43	811	IPR044974	GO:0006952
	Vvi16g0646	841	Gene3D	-	156	332	IPR027417	-
	Vvi16g0646	841	Gene3D	-	415	505	IPR036388	-

Showing 1 to 10 of 17 entries

Previous1 2Next

Duplication type information

Show entries

Search:

Select	Gene	Chromosome	Start	End	Duplicated_type
	Vvi16g0646	Vvi-Chr16	13303364	13305889	Dispersed/Transposed

Showing 1 to 1 of 1 entries

Functional genes information

Show entries

Search:

Select	Gene	Gene_start	Gene_end	Function	Ath_gene	Identity(%)	E-value	Score
	Vvi16g0646	202	510	WRKY Transcription Factor Family	AT5G45050	25.298	1.07e-06	50.8

Showing 1 to 1 of 1 entries

Pathway information

Show entries

Search:

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Vvi16g0646	-		-	vvi:100254147	1625.91

Showing 1 to 1 of 1 entries